PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154536001
Common NameGSBRNA2T00154536001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 263aa    MW: 30179.6 Da    PI: 9.3447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154536001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-131663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W+++Ede+l   +  +G  +W+t++ + g+ R +k+c++rw +yl
  GSBRNA2T00154536001 16 KGFWSPDEDEKLRSFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 63
                         688*******************************************97 PP

2Myb_DNA-binding44.92.6e-1473114548
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +eE+e+++  +  lG++ W++Ia+ ++ gRt++++k++w+++l
  GSBRNA2T00154536001  73 NAEEEEIILTFHSSLGNK-WSRIAKFLP-GRTDNEIKNYWHSHL 114
                          68****************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3521163IPR017930Myb domain
SuperFamilySSF466892.43E-2613110IPR009057Homeodomain-like
SMARTSM007175.1E-91565IPR001005SANT/Myb domain
PfamPF002494.4E-111763IPR001005SANT/Myb domain
CDDcd001672.56E-71963No hitNo description
Gene3DG3DSA:1.10.10.602.3E-191970IPR009057Homeodomain-like
PROSITE profilePS5129422.164118IPR017930Myb domain
SMARTSM007178.2E-1468116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2371118IPR009057Homeodomain-like
CDDcd001678.25E-1073114No hitNo description
PfamPF002492.4E-1274114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVKTIAGERP KQRQRKGFWS PDEDEKLRSF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI  60
NYLRPGLKRD VINAEEEEII LTFHSSLGNK WSRIAKFLPG RTDNEIKNYW HSHLKKKWLK  120
SQKLQHARSI STSSESLVAC GRRNPQTLIS NHVISFQPLQ EKTSSSPSQE SNDNNNNNKN  180
SYSCSSGPEI PRLFFSEWFT SSDPYFDHSS NLTDSNHIQT PNIQGTVSDY EESGDVNQFY  240
YNEMVMMSNS NWTLNDVVFG SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-23161177107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154536001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196091e-141AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597083.10.0PREDICTED: transcription factor LAF1
SwissprotQ9M0K41e-139LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0D3DG410.0A0A0D3DG41_BRAOL; Uncharacterized protein
STRINGBo7g110400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-114myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]