PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00154448001 | ||||||||
Common Name | GSBRNA2T00154448001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 25983.7 Da PI: 9.8488 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.1 | 9.9e-28 | 21 | 71 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr gi+KKA ELSvLCda+va+iifs tgkl+e+ss GSBRNA2T00154448001 21 KKIDNITARQVTFSKRRRGIFKKAGELSVLCDADVALIIFSATGKLFEFSS 71 68***********************************************96 PP | |||||||
2 | K-box | 63.7 | 7e-22 | 99 | 183 | 14 | 98 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + +l++L +e+e +++R+l GedLe L+l+eLq+Le+ Le++l+++ +kK e+l++qi+ l k+ el +en++Lr+++ GSBRNA2T00154448001 99 HQLEDCNLSRLSQEVEDKTKQLRKLRGEDLEGLNLEELQRLEKMLESGLSRVSEKKGEFLMSQISSLEKRGSELADENRRLRERV 183 555666889*************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.511 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-29 | 13 | 83 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-36 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.09E-34 | 14 | 81 | No hit | No description |
PRINTS | PR00404 | 1.1E-24 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 15 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-24 | 22 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-24 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-24 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.73 | 99 | 190 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-18 | 104 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MGRQDSRSVV KKMAREKRRI KKIDNITARQ VTFSKRRRGI FKKAGELSVL CDADVALIIF 60 SATGKLFEFS SSRMRDILGR YNLHASNINK VMGLPSPYHQ LEDCNLSRLS QEVEDKTKQL 120 RKLRGEDLEG LNLEELQRLE KMLESGLSRV SEKKGEFLMS QISSLEKRGS ELADENRRLR 180 ERVVTTMEMA KTMALKEAVE TESATTNVSS YDSGAPLEDD FSDTSLKLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-17 | 13 | 81 | 1 | 69 | MEF2C |
5f28_B | 3e-17 | 13 | 81 | 1 | 69 | MEF2C |
5f28_C | 3e-17 | 13 | 81 | 1 | 69 | MEF2C |
5f28_D | 3e-17 | 13 | 81 | 1 | 69 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 37 | KRRIKKIDNITARQVTFSKRRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During vegetative phase, expressed in the entire shoot apical meristem and in emerging leaf primordia. During floral transition, gradually detectable in the transitional shoot apex and young cauline leaves. Detected in the inflorescence meristem. Present throughout the tunica (superficial layers) of the floral meristem during early stages of flower development. Later disappears prior to emergence of sepal primordia. At later stages of floral development, weakly expressed in the distal parts of stamens and carpels. Then restricted to pollen and the adaxial surface of the gynoecium. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:19656343}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in shoot apical meristems, including floral meristems. Also detected in stems, seedlings, leaves, flowers and siliques, and, to a lower extent, in roots. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:19656343}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18466303, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00154448001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by vernalization in a FLC-independent manner. Repressed by the floral homeotic genes AP1, LFY and SEP3 in emerging floral meristems to establish a floral identity and prevent inflorescence fate. Up-regulated at the shoot apex by SOC1. {ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ906707 | 0.0 | JQ906707.1 Brassica napus clone AGL24-1 MADS-box protein AGL24 (AGL24) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593895.1 | 1e-156 | PREDICTED: MADS-box protein AGL24-like isoform X2 | ||||
Refseq | XP_013644218.1 | 1e-156 | MADS-box protein AGL24-like isoform X2 | ||||
Swissprot | O82794 | 1e-125 | AGL24_ARATH; MADS-box protein AGL24 | ||||
TrEMBL | A0A0D3DFW0 | 1e-164 | A0A0D3DFW0_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g109590.1 | 1e-165 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14511 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 1e-114 | AGAMOUS-like 24 |