PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154418001
Common NameGSBRNA2T00154418001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 408aa    MW: 44702.4 Da    PI: 7.011
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154418001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.13.7e-24161206146
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                          d+ep+rC+RtDGKkWRCsr++++++k+CErH h++r rsrk++e+s
  GSBRNA2T00154418001 161 DMEPWRCKRTDGKKWRCSRNAVPDQKYCERHAHKSRPRSRKHVETS 206
                          79*****************************************975 PP
2QLQ51.72.6e-1893128136
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                          saF+ aQ+++L++Q  ++Ky++a++PvP+eLl++ +
  GSBRNA2T00154418001  93 SAFSEAQWHELERQRNIFKYMMASLPVPSELLLPFS 128
                          89******************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.9E-1193129IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.1E-1294126IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.83694129IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.325161205IPR014977WRC domain
PfamPF088792.2E-19162204IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MRTRAERNKE DFVGGFGFGV VEHSHKDVML PSHHYHSYSS PSSASFCYCS NGAADPIFSA  60
SNTSSLGEMF SLEGSNASAA VSVADPFFTL TSSAFSEAQW HELERQRNIF KYMMASLPVP  120
SELLLPFSKN SSHTNNQDVT VARGGSLQLG IASNASNSTA DMEPWRCKRT DGKKWRCSRN  180
AVPDQKYCER HAHKSRPRSR KHVETSPHSH HSETRTTKNV ASQFATPYPQ FYGPPLSQFS  240
AVSTLPPGSS SYDHHPNSGL RWLMKEGDSI ATLNPEIHES AQLKVGSSRE LKRGFEYDLN  300
YIQNEPLVDQ RFGALEGLLS PNRQETRRFL VEGEQDEAMG SSLTLSMAGG MEEGEGRSQH  360
QWISHEGPSW LCSTTPGGPL AEALCLGVPN NPSTSTTTTS SCSRSSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.53750.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot tips and flowers. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154418001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596095.10.0PREDICTED: growth-regulating factor 8-like isoform X2
SwissprotQ9SU441e-177GRF8_ARATH; Growth-regulating factor 8
TrEMBLA0A0D3DFT60.0A0A0D3DFT6_BRAOL; Uncharacterized protein
STRINGBo7g109350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-173growth-regulating factor 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]