PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154277001
Common NameGSBRNA2T00154277001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 255aa    MW: 28621.9 Da    PI: 8.7636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154277001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182171155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  GSBRNA2T00154277001 21 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 71
                         699*******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.28E-332181No hitNo description
PfamPF008475.2E-132171IPR001471AP2/ERF domain
SMARTSM003807.0E-392285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-282280IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-192279IPR016177DNA-binding domain
PROSITE profilePS5103219.8232279IPR001471AP2/ERF domain
PRINTSPR003674.1E-82334IPR001471AP2/ERF domain
PRINTSPR003674.1E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MENKTTQKQK TKEKSKSNNK TKFVGVRQRP SGKWVAEIKD TTQKIRMWLG TFETAEEAAR  60
AYDEAACLLR GSNTRTNFAN HFPNNSQLSL KIRNLLHQKQ TMKQQQQKPK QNKPVSFFAE  120
CSINYTSNAT TLTSTTTTTT VLPLNNVYRP DSSVISHPEA DSVQLPYTWP LVSGFNHHVP  180
LAQGGEEPHG HLNNQNSTDQ HLGLADIERQ ISASLYAMNG ANGYYDNMNT EYAIFDPTDP  240
IWDLPSLSQL FCPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-152378359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-1422881481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154277001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891860.0AC189186.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001J13, complete sequence.
GenBankAC1894300.0AC189430.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB067F22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013667343.10.0ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S11e-139RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A3P6D7630.0A0A3P6D763_BRACM; Uncharacterized protein
STRINGBra002262.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-114related to AP2 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]