PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153798001
Common NameGSBRNA2T00153798001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 296aa    MW: 34416.9 Da    PI: 10.244
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153798001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.12.2e-2016108197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk++ ++d +++++  lp +f+ ++ +k+  s +++++ e+g sWev +  +k+++  yv ++GW++Fv++n L +++f++F+++g+++
  GSBRNA2T00153798001  16 FFKIFQSADLSSECMRALPYNFM-QNLSKEDFSYKMVIRAEWGSSWEVDV--SKNPRFyYVEKSGWNQFVSDNALGDNEFITFTHKGSMS 102
                          99*********************.66567789******************..****9977788**********************99999 PP

                          E..EEEEE CS
                   B3  90 felvvkvf 97 
                          f  +v ++
  GSBRNA2T00153798001 103 F--NVNIY 108
                          9..66665 PP
2B338.12.7e-122062851395
                          TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++ l lp+ f eeh   + es++ t+ + e   sW+v +    + +r+v+++GW++ +++  Lk+gD ++Fkl++ +ef l  k
  GSBRNA2T00153798001 206 LKFLLLPRVFEEEHI--PGESMEYTIHHsEMKCSWNVLC--LVRENRTVFSSGWSRLAREFPLKVGDRCTFKLIKPTEFVLITK 285
                          456899****99993..5578899998846669******..888888**************************99888855544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1810112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-1911116IPR015300DNA-binding pseudobarrel domain
CDDcd100174.39E-1715108No hitNo description
PfamPF023622.1E-1816108IPR003340B3 DNA binding domain
PROSITE profilePS5086313.3116111IPR003340B3 DNA binding domain
SMARTSM010193.5E-2316111IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-17192283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-14192283IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.912194288IPR003340B3 DNA binding domain
CDDcd100172.86E-9195278No hitNo description
SMARTSM010194.6E-12197287IPR003340B3 DNA binding domain
PfamPF023629.0E-11205286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGWNGRIKEE RKNLSFFKIF QSADLSSECM RALPYNFMQN LSKEDFSYKM VIRAEWGSSW  60
EVDVSKNPRF YYVEKSGWNQ FVSDNALGDN EFITFTHKGS MSFNVNIYGK NGKEIVTPRK  120
PLTATPLSGV KKEEGERSYK DVKKEEETCE SMDGVEVEET TKKAYKTSKK KKKKKSKKLK  180
TLKKKKIKTV KKGVPEFEIT IRKSYLKFLL LPRVFEEEHI PGESMEYTIH HSEMKCSWNV  240
LCLVRENRTV FSSGWSRLAR EFPLKVGDRC TFKLIKPTEF VLITKKSRKE ITVIG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174KKKKKKK
2168177KKKKKKKSKK
3169177KKKKKKSKK
4170185KKKKKSKKLKTLKKKK
5171185KKKKSKKLKTLKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153798001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893481e-164AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146048.10.0PREDICTED: B3 domain-containing protein At3g17010-like
RefseqXP_013639997.10.0B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-117Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A3P5ZID40.0A0A3P5ZID4_BRACM; Uncharacterized protein
STRINGBra022189.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-114B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]