PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00153781001 | ||||||||
Common Name | GSBRNA2T00153781001, LOC106452069 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26928.3 Da PI: 5.0352 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 79 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+W++eIrdp++ +r++lg+f taeeAa a++ a+k+++g GSBRNA2T00153781001 79 VYRGIRKRP-WGKWASEIRDPRK---GTRVWLGTFNTAEEAAMAYDVAAKRIRG 128 69*******.**********954...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-23 | 79 | 137 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-13 | 79 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.999 | 79 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-33 | 79 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-37 | 79 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.68E-33 | 80 | 138 | No hit | No description |
PRINTS | PR00367 | 8.2E-12 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-12 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MCGGAIISDF VPILTKAKGR KLTAEELWSE LDASAGDYLW GFHPTSKLQS TNQEEVALKD 60 EAVVNKREPA TEKRRRKNVY RGIRKRPWGK WASEIRDPRK GTRVWLGTFN TAEEAAMAYD 120 VAAKRIRGDK AKLNFPDLIP PPATPALTSS PPSDDQPPAK KLCLLSQSEL TQLSFPDECI 180 GFGNGGQFQN HSYGFEPGYD LKQQISSLES FLELDGTTAE QPSQLDESVD MWMIDDVISS 240 YA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 80 | 136 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 77 | EKRRRKN |
2 | 72 | 86 | KRRRKNVYRGIRKRP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00153781001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146062.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X1 | ||||
Refseq | XP_013749539.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 isoform X1 | ||||
Swissprot | P42736 | 1e-127 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | M4E079 | 1e-179 | M4E079_BRARP; Uncharacterized protein | ||||
STRING | Bra022176.1-P | 1e-180 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-114 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106452069 |