PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153580001
Common NameGSBRNA2T00153580001, LOC106386103
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 208aa    MW: 23851.9 Da    PI: 9.6853
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153580001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-162572148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++l +++  +G g W+++a+  g++Rt+k+c++rw++yl
  GSBRNA2T00153580001 25 KGPWTMEEDLILFNYIFNHGEGLWNSVAKASGLKRTGKSCRLRWLNYL 72
                         79********************************************97 PP
2Myb_DNA-binding53.55.3e-1778121146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE++l++++ ++lG++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00153580001  78 RGNITAEEQLLIIQLQAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 121
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.4242072IPR017930Myb domain
SuperFamilySSF466897.49E-2923119IPR009057Homeodomain-like
SMARTSM007171.5E-122474IPR001005SANT/Myb domain
PfamPF002494.2E-152572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-212679IPR009057Homeodomain-like
CDDcd001675.00E-92772No hitNo description
PROSITE profilePS5129424.08473127IPR017930Myb domain
SMARTSM007171.1E-1577125IPR001005SANT/Myb domain
PfamPF002492.0E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2480127IPR009057Homeodomain-like
CDDcd001675.37E-1282121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTKTGRSGKD RITSQKEEEE GTVRKGPWTM EEDLILFNYI FNHGEGLWNS VAKASGLKRT  60
GKSCRLRWLN YLRPDVRRGN ITAEEQLLII QLQAKLGNRW SKIAKHLPGR TDNEIKNFWR  120
TKIQRHMKLS SSETMNTRHC LGSSQSSVMT TTDQGSSSKA FHMAESLKST ETVTTSYNVM  180
EQSNDSYWSV EDLWPVQLFN DDHHQLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-262512527126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in flowers. {ECO:0000269|PubMed:19325888}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153580001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180911e-145AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03.
GenBankBT0055741e-145BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681452.11e-154transcription factor MYB57
SwissprotQ9SSA11e-109MYB57_ARATH; Transcription factor MYB57
TrEMBLA0A3N6SZZ81e-149A0A3N6SZZ8_BRACR; Uncharacterized protein
STRINGBo3g055110.11e-147(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-111myb domain protein 57
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]