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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00153547001 | ||||||||
Common Name | GSBRNA2T00153547001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 38121.1 Da PI: 7.6109 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.7 | 6.7e-16 | 164 | 209 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq GSBRNA2T00153547001 164 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 209 9************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-18 | 157 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.815 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.86E-17 | 164 | 212 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-17 | 164 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-13 | 164 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-17 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MSQCVPNYHI DDTPAATVRS TKAADIPTLD YEVAELTWHN GQLGLHGLCP PRWTKLLASL 60 TLSPPMSSQP ATGVGSCSDG HPMDGGKRAR VAPEWSASRS QRLTIDTYGF TSTSLDDNSS 120 SGGKPFPKTT NIDDHDSVEE EEEEKQTGGK SSASTKRSRA AAIHNQSERK RRDKINQRMK 180 TLQKLVPNSS KTDKASMLDE VIEYLKQLQA QVYMMSRMNM PSMMLPMAMQ QQQQQLQLNL 240 MSSSMGLGLR MGMPGLGLVD LSSMNRAATA TAPNIHANMM QNPFVPMTST SWDASSSTDP 300 RFQSPLIPDP MSAFLACSSQ PTTMEAYSRM AALYHQMQQQ LPPSNQN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 172 | ERKRRD |
2 | 168 | 173 | RKRRDK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00153547001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117229 | 0.0 | AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08. | |||
GenBank | BT025971 | 0.0 | BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013684278.1 | 0.0 | transcription factor UNE10-like | ||||
Swissprot | Q8GZ38 | 1e-135 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | A0A0D3B7I9 | 0.0 | A0A0D3B7I9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g042120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3919 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-106 | bHLH family protein |
Publications ? help Back to Top | |||
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