PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00153520001

Common Name

GSBRNA2T00153520001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 795aa MW: 87051 Da PI: 6.0988

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00153520001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.2	9e-21	135	190	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+k+l L++rqVk+WFqNrR+++k GSBRNA2T00153520001 135 KKRYHRHTPQQIQELESMFKECPHPDEKQRLDLSKRLCLETRQVKFWFQNRRTQMK 190 688999***********************************************999 PP
2	START	207.1	7.1e-65	322	542	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 ela++a++elvk+ + +ep+Wvks +++n++e++++f+++k +ea+rasg+v+ ++ lve+l+d++ +W e+++ +a GSBRNA2T00153520001 322 ELALTAMDELVKLTQNDEPLWVKSLdgerDELNQEEYVRTFSSNKQtgLVTEASRASGMVIINSLALVETLMDSN-RWIEMFPcnvaRAI 410 5899***********************************99998999**********************.***9999* PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 t++vis g galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++++ s v +++lpSg++++++sng+sk GSBRNA2T00153520001 411 TTDVISGGmagtrnGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRDNS-GGSAVTVRRLPSGCVVQDMSNGYSK 499 **************************************************************.79999999************* PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtwveh++++++++h l+r+l++sgl +g ++wvatlqrqce+ GSBRNA2T00153520001 500 VTWVEHAEYDENQIHHLYRPLLRSGLGFGSQRWVATLQRQCEC 542 ***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-21	122	192	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-20	123	192	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	132	192	IPR001356	Homeobox domain
SMART	SM00389	2.6E-17	133	196	IPR001356	Homeobox domain
CDD	cd00086	8.11E-18	134	192	No hit	No description
Pfam	PF00046	2.7E-18	135	190	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	167	190	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.446	313	545	IPR002913	START domain
CDD	cd08875	2.29E-112	317	541	No hit	No description
SuperFamily	SSF55961	3.11E-30	317	542	No hit	No description
SMART	SM00234	1.4E-42	322	542	IPR002913	START domain
Pfam	PF01852	2.5E-57	322	542	IPR002913	START domain
SuperFamily	SSF55961	1.72E-23	561	780	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MNFGSLFDNT NGGSPTGARI LSGLTYGNHT TASTVIPGGA MAQVAAASLF SPPINTKTVY 60 SSGLSLALEQ PERGGGGTNR GEASMRNNNN DNNFEGSTTN RRSREEEHES RSGSDNVEGI 120 SGEDQDADDN KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLDLSKR LCLETRQVKF 180 WFQNRRTQMK TQLERHENAL LRQENDKLRA ENMSIREAMR NPMCNNCGGP AMLGDVSLEE 240 HHLRIENARL KDELDRVCNL TGKFLGHHNH HSSSLELAVG NNNGGNFNFP PDFGGGGCLP 300 PPPQQHQSMV VNGIDQRSVL LELALTAMDE LVKLTQNDEP LWVKSLDGER DELNQEEYVR 360 TFSSNKQTGL VTEASRASGM VIINSLALVE TLMDSNRWIE MFPCNVARAI TTDVISGGMA 420 GTRNGALQLM NAELQVLSPL VPVRNVNFLR FCKQHAEGVW AVVDVSIDTV RDNSGGSAVT 480 VRRLPSGCVV QDMSNGYSKV TWVEHAEYDE NQIHHLYRPL LRSGLGFGSQ RWVATLQRQC 540 ECLAILMSSS VTPHDNSSIT PGGRKSMLKL AQRMTVNFCS GISAPSVHSW SKLTVENVDP 600 DVRVMTRKSV DDSGIVLSAA TSVWLPASPQ RLFDFLRNER MRCEWDILSN GGPMQEMAHI 660 AKGQDQGNSV SLLRSNPMNA NQSSMLILQE TCIDASGALV VYAPVDIPAM NVVMNGGDSS 720 YVALLPSGFA VLPDGGSGDV EQRPVGGGSL LTVAFQILVN NLPTAKLTVE SVETVNNLIS 780 CTVQKIRDAL QCES*

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MNFGSLFDNT NGGSPTGARI LSGLTYGNHT TASTVIPGGA MAQVAAASLF SPPINTKTVY  60
SSGLSLALEQ PERGGGGTNR GEASMRNNNN DNNFEGSTTN RRSREEEHES RSGSDNVEGI  120
SGEDQDADDN KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLDLSKR LCLETRQVKF  180
WFQNRRTQMK TQLERHENAL LRQENDKLRA ENMSIREAMR NPMCNNCGGP AMLGDVSLEE  240
HHLRIENARL KDELDRVCNL TGKFLGHHNH HSSSLELAVG NNNGGNFNFP PDFGGGGCLP  300
PPPQQHQSMV VNGIDQRSVL LELALTAMDE LVKLTQNDEP LWVKSLDGER DELNQEEYVR  360
TFSSNKQTGL VTEASRASGM VIINSLALVE TLMDSNRWIE MFPCNVARAI TTDVISGGMA  420
GTRNGALQLM NAELQVLSPL VPVRNVNFLR FCKQHAEGVW AVVDVSIDTV RDNSGGSAVT  480
VRRLPSGCVV QDMSNGYSKV TWVEHAEYDE NQIHHLYRPL LRSGLGFGSQ RWVATLQRQC  540
ECLAILMSSS VTPHDNSSIT PGGRKSMLKL AQRMTVNFCS GISAPSVHSW SKLTVENVDP  600
DVRVMTRKSV DDSGIVLSAA TSVWLPASPQ RLFDFLRNER MRCEWDILSN GGPMQEMAHI  660
AKGQDQGNSV SLLRSNPMNA NQSSMLILQE TCIDASGALV VYAPVDIPAM NVVMNGGDSS  720
YVALLPSGFA VLPDGGSGDV EQRPVGGGSL LTVAFQILVN NLPTAKLTVE SVETVNNLIS  780
CTVQKIRDAL QCES*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.8846	0.0	seed\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00153520001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353253	0.0	AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013629750.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A3P6AA33	0.0	A0A3P6AA33_BRACM; Uncharacterized protein
STRING	Bo3g054630.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]