PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153111001
Common NameGSBRNA2T00153111001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 589aa    MW: 63574.8 Da    PI: 5.8802
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153111001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.52.1e-1062145882374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +++++e+A+a+s+g++e + +lLa +s + +++ ++ ++l+ +++ AL+ r++       +  pps+++e   +e+l +++l++e+sP++
  GSBRNA2T00153111001 214 RQTVMEIATAISEGKTEIVAELLACVSPTPNQKTNSEEKLVNFMVTALRLRINP----AESRAPPSPARELCGKEHLISTQLLYELSPCF 299
                          6889*************************************************9....66777899998888****************** PP

                 GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                          k+++++aN aIl+a+ ++      +H++Df+i++G+Q+++Ll+aL++R+   ++   ++iT+v +  +g +e+l+++g+rL+++ ++lgv
  GSBRNA2T00153111001 300 KLGFMAANLAILDAAGNNhdggVLMHVVDFEIGEGGQYVNLLHALSTRRsgdNKHLVVKITAVTN--HGGEERLKAVGDRLSQLGDRLGV 387
                          ***************9997754567*********************999543334489*******..77********************* PP

                 GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                          +++fnv+++ rl d++ e+L + p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++ea+ +y
  GSBRNA2T00153111001 388 SLRFNVVASLRLGDISRESLGCGPDEPLAVNLAFKLYRVPDESVCVENPRDELLRRVKGLEPRVVTLVEQEMNSNTAPFLGRVSEACACY 477
                          ******8888******************************************************************************** PP

                 GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve 352
                           al+d +e+++p+ + +r+kvE+  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ +plsek+a+++k+ l + +    g++v+
  GSBRNA2T00153111001 478 GALLDLVESSVPSSNLDRAKVEEG-IGRKLINAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRLGNGNrvHSGFTVK 566
                          ************************.*************************************************999887767899**** PP

                 GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                          e++g +++ W++r+L ++SaWr
  GSBRNA2T00153111001 567 EDNGGVCFRWMGRTLAVASAWR 588
                          *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.524187566IPR005202Transcription factor GRAS
PfamPF035147.3E-104214588IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MVSGFPNDGG GPEFYGGDGR SIPGGFGTVV NTVNNNPQAT YRSQIPGIFL DQTGNRFSGG  60
NGIGGKRTLA DFQAAQQQQA AINAFLLRSV KPRTFQNLQS PTIGLTSVND MSLFGGSSQT  120
QHQSDLVGIR MGYGSSIEPV QNLNRVEESK NMLSSLRELE KQLLEDDDES DARGGDDDVS  180
TITHSNSDWL HSLVTPVLSS SPSSASSSST VCSRQTVMEI ATAISEGKTE IVAELLACVS  240
PTPNQKTNSE EKLVNFMVTA LRLRINPAES RAPPSPAREL CGKEHLISTQ LLYELSPCFK  300
LGFMAANLAI LDAAGNNHDG GVLMHVVDFE IGEGGQYVNL LHALSTRRSG DNKHLVVKIT  360
AVTNHGGEER LKAVGDRLSQ LGDRLGVSLR FNVVASLRLG DISRESLGCG PDEPLAVNLA  420
FKLYRVPDES VCVENPRDEL LRRVKGLEPR VVTLVEQEMN SNTAPFLGRV SEACACYGAL  480
LDLVESSVPS SNLDRAKVEE GIGRKLINAV ACEGIDRIER CEVFGKWRMR MSMAGFELMP  540
LSEKIAESMK SRLGNGNRVH SGFTVKEDNG GVCFRWMGRT LAVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-3420058874473Protein SHORT-ROOT
5b3h_B5e-3520258822419Protein SHORT-ROOT
5b3h_E5e-3520258822419Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.127170.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153111001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615905.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0D3AMR00.0A0A0D3AMR0_BRAOL; Uncharacterized protein
STRINGBo2g047700.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]