PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00153041001

Common Name

GSBRNA2T00153041001, LOC106381002

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 289aa MW: 30999.5 Da PI: 6.1478

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00153041001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.5	1.7e-36	52	149	3	103
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++++a ++ + + ++s + + GSBRNA2T00153041001 52 APKRPSKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTIPAIAVsV--NGALKIPTDSTP--Q 137 5699***********************************************************9999955421..222222222222..1 PP TCP 92 ksaakskksqks 103 ++ ++ ++++ GSBRNA2T00153041001 138 FESDGGSGKRRR 149 222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.776	57	111	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.4E-29	57	133	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGSNLEGKEA MAHLSDPDPE TNRGMLLKEE DDDPKKQQEV GFLQPMTSSV TAPKRPSKDR 60 HTKVEGRGRR IRMPAGCAAR IFQLTRELGH KSDGETIRWL LERSEPAIIE ATGTGTIPAI 120 AVSVNGALKI PTDSTPQFES DGGSGKRRRR NCTSEFVDIN RQDSSVTSGL APITASSYGV 180 NLMNVNAQNF VPFWQTGFVT GGPNQMGHMW AIPTVAAPSF LNGGTTRPVP SYVSNTSEAE 240 PQMGTSGGGD DGTTQTLRDF SLETYDKKEL QFLGCSGDNT SPSSCRGT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.15490	1e-138	flower\| seed

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00007	PBM	Transfer from 495258	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00153041001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614476.1	0.0	PREDICTED: transcription factor TCP19
Refseq	XP_013676320.1	0.0	transcription factor TCP19
Refseq	XP_022551734.1	0.0	transcription factor TCP19
Swissprot	Q9LT89	1e-123	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A0D2ZSV2	0.0	A0A0D2ZSV2_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6D4A5	0.0	A0A3P6D4A5_BRAOL; Uncharacterized protein
STRING	Bo00998s020.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12583	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-118	TCP family protein

Link Out ? help Back to Top
Entrez Gene	106381002

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]