PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153030001
Common NameGSBRNA2T00153030001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 189aa    MW: 21957.2 Da    PI: 7.8642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153030001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-142576255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         +++h e+Er+RR+++ s ++ Lr+llP  +   ++K s ++ + +Av+YI +L+
  GSBRNA2T00153030001 25 KMMHREIERQRRQEMASLYASLRSLLPLHF--IQGKRSTSDQVNEAVNYITYLE 76
                         789*************************65..*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-142190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.9352375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-102590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-112576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-82580No hitNo description
SMARTSM003534.8E-62981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.0E-4135186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDDCREKRRR CTKLRVSTDN NDMEKMMHRE IERQRRQEMA SLYASLRSLL PLHFIQGKRS  60
TSDQVNEAVN YITYLEKKIK ELSLRRDELM LLSRGTRLDD SKDEMETMNH VVVRQCLVGV  120
EIVFSSRSCR GQPRLSSVLQ VLSENGLCLL NSTSSIVDDR LIYTLQAEVN DSNLIDLSEL  180
EERLTRMK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153030001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174301e-72AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBankBT0109521e-72BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674763.11e-131transcription factor bHLH36-like
RefseqXP_013710558.11e-131transcription factor bHLH36-like
SwissprotQ9FLI14e-88BH036_ARATH; Transcription factor bHLH36
TrEMBLA0A078IC521e-130A0A078IC52_BRANA; BnaAnng08070D protein
TrEMBLA0A3P6A1T71e-130A0A3P6A1T7_BRACM; Uncharacterized protein
STRINGBra022562.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-90bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]