PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00151724001 | ||||||||
Common Name | GSBRNA2T00151724001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 322aa MW: 35863.5 Da PI: 7.7753 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.7 | 1.6e-05 | 20 | 60 | 6 | 40 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+++ + + +C+ ++ +lC++C + H H++v GSBRNA2T00151724001 20 CNTCRSAACTVYCRADSAYLCATCDAQVHAAnllasrHERV 60 ******99*********************657788888776 PP | |||||||
2 | zf-B_box | 31.3 | 4.1e-10 | 60 | 105 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ +fC+ + lC C ++ H H++vp+ GSBRNA2T00151724001 60 VRVCEACERAPAAFFCKADAASLCIACDSQVHLAnplarrHQRVPI 105 689*****************************55577777999987 PP | |||||||
3 | CCT | 67.8 | 2.9e-23 | 252 | 296 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea+++RY+eK+ktRkFeK++rY+sRKa+Ae+RpR+KGrFvk++e GSBRNA2T00151724001 252 REARVMRYREKKKTRKFEKRVRYASRKAYAETRPRIKGRFVKREE 296 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.822 | 15 | 62 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.0E-7 | 15 | 62 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.57E-6 | 20 | 62 | No hit | No description |
PROSITE profile | PS50119 | 12.273 | 58 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.4E-8 | 60 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.53E-9 | 61 | 105 | No hit | No description |
SMART | SM00336 | 2.0E-10 | 63 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.1E-17 | 252 | 294 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.847 | 252 | 294 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MLKQERNRTK VCNTCRSAAC NTCRSAACTV YCRADSAYLC ATCDAQVHAA NLLASRHERV 60 RVCEACERAP AAFFCKADAA SLCIACDSQV HLANPLARRH QRVPILPISS MATNHSSETT 120 AMTDPENIVV MGQEEEDETE VASWLLPSSE KNNNNSLDLV DCQQDYNVVP RSRYARDGVV 180 PLQVEESKAH VHHEQHNFQF GFTNVSSGCH MVSLVLESTS SDTTVLLHSP SPKAATDQLP 240 DPSTQIFSPG EREARVMRYR EKKKTRKFEK RVRYASRKAY AETRPRIKGR FVKREEVDAE 300 ADQGFPTMIM FNTGYGVVPS L* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves and at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00151724001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240087 | 0.0 | AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616700.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 1-like | ||||
Refseq | XP_013659923.1 | 0.0 | zinc finger protein CONSTANS-LIKE 1-like | ||||
Swissprot | O50055 | 1e-126 | COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | A0A0D3AJ98 | 0.0 | A0A0D3AJ98_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g012810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15850.1 | 1e-104 | CONSTANS-like 1 |
Publications ? help Back to Top | |||
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