PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151581001
Common NameGSBRNA2T00151581001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 508aa    MW: 55744 Da    PI: 6.8422
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151581001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29279337259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+Y+rCt+a gCpv+k+v+r+ae+ +++++tYeg+Hnh+
  GSBRNA2T00151581001 279 SDGCHWRKYGQKMAKGNPCPRAYFRCTMAvGCPVRKQVQRCAEERSILITTYEGNHNHP 337
                          7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-32263339IPR003657WRKY domain
SuperFamilySSF1182906.41E-27271339IPR003657WRKY domain
PROSITE profilePS5081128.231273339IPR003657WRKY domain
SMARTSM007741.1E-35278338IPR003657WRKY domain
PfamPF031061.0E-25280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MFRFPVSLGG PHDNPKQPQS SDEQPHRAMM DEVDFFRSEK RDDQNIITDE TNTVHVKREN  60
SRVVDDDDRS TGINTGLNLL TAHTGSDESM VDDGLSVDME EKRSKIENVQ LREELKKAAE  120
EIQRLKEMLS QTTNNFNSLQ MQLVAVMRQQ EDHHHLAMTG SKDMTNKRHE GSDMVPRQFM  180
ELGLPTAEVS SDERTTVRSR SPPSLLENSS SRQRGKRLLE REESPETQSN GWGNPNKVSK  240
HNASSSNDNV SAIDQSTAEA TMRKARVSVR ARSEAPTLSD GCHWRKYGQK MAKGNPCPRA  300
YFRCTMAVGC PVRKQVQRCA EERSILITTY EGNHNHPLPP AAMYMASTTT AAASMLLSGS  360
TMSSQDGLMN PTNLFARTML PCSSSMATIS ASAPFPTITL DLTESASNFP QRSGFTELNQ  420
SGLPQMMGQA LYYNQQQSKF SGLQIPTQSL NAGENVSAAT AAIAANPNFA AALAAALTSI  480
INGPNNHKNG DSNTGNNNVR TSSVERQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20265341176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151581001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465790.0KC246579.1 Brassica napus WRKY transcription factor 42.1 (WRKY42.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288972.10.0probable WRKY transcription factor 42
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A078G7B70.0A0A078G7B7_BRANA; BnaC03g29850D protein
STRINGBra000793.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]