PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151471001
Common NameGSBRNA2T00151471001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 278aa    MW: 30327.8 Da    PI: 4.8783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151471001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2301.3e-0998122225
                  AP2   2 gykGVrwdkkrgrWvAeIrdpse..n 25 
                          +y+GVr+++ +g+W+AeIrdps   +
  GSBRNA2T00151471001  98 KYRGVRQRP-WGKWAAEIRDPSRrlR 122
                          8********.**********855444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-1097120IPR001471AP2/ERF domain
PROSITE profilePS5103210.94298167IPR001471AP2/ERF domain
CDDcd000183.10E-1298130No hitNo description
SMARTSM003807.2E-998137IPR001471AP2/ERF domain
PfamPF008471.1E-498118IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-698131IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEAEKNVVKL SEHNIMTATT VTQPRILRIS VSDPYATDSS SDEEEDFADI SRKRRRVKKF  60
INEVVLESTV SDKDRPKKKK RPNTKTTAST AVTAPARKYR GVRQRPWGKW AAEIRDPSRR  120
LRGPNALTNF SPTPPPPATE NGEEASKEMD GVSDITTSGG VECLGSPVSV LQTPFSGEST  180
AATTVKEEFS GVSKTAVEVK EEPSLTVSDT FTGFSSPLFL HDDVFGFPTT MPDCFGDEFF  240
ADMSFGFGSG SGFSSWHVED HFQDIGDLFG SDPLLIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155RKRRR
25158RKRRRVKK
35256KRRRV
47379DRPKKKK
57581PKKKKRP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151471001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740851.11e-177ethylene-responsive transcription factor CRF1-like
SwissprotO825038e-90CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A3P5ZSG70.0A0A3P5ZSG7_BRACM; Uncharacterized protein
STRINGBra000736.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-84cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]