PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00151176001 | ||||||||
Common Name | GSBRNA2T00151176001, LOC106440308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 591aa MW: 65088.9 Da PI: 6.6441 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91 | 9.9e-29 | 203 | 256 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av++L G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ GSBRNA2T00151176001 203 KPRVVWSVELHQQFVAAVNHL-GVDKAVPKKILEMMNVQGLTRENVASHLQKYRI 256 79*******************.********************************7 PP | |||||||
2 | Response_reg | 77.1 | 6.1e-26 | 22 | 130 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vdD+p+ +++l+++l+ y +v+ + +e al+ll++++ +D+++ D+ mp+m+G++ll++ e +lp+i+++a ++++ +l+ GSBRNA2T00151176001 22 VLVVDDDPTCLMILERMLKTCLY-RVTKCNRAEIALTLLRKNKngFDIVISDVHMPDMNGFKLLEHVGLEM-DLPVIMMSADDSKSVVLK 109 89*********************.***************999999**********************6644.8***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +e+l + GSBRNA2T00151176001 110 GVTHGAVDYLIKPVRIEALKN 130 *****************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 8.2E-171 | 4 | 583 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 5.83E-35 | 18 | 146 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 7.3E-41 | 19 | 161 | No hit | No description |
SMART | SM00448 | 1.2E-29 | 20 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.91 | 21 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.1E-22 | 22 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.16E-27 | 23 | 135 | No hit | No description |
PROSITE profile | PS51294 | 12.263 | 200 | 259 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-19 | 201 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-29 | 202 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.5E-25 | 203 | 256 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-8 | 205 | 255 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MLTPGAVGGS SNSDPFPSGL RVLVVDDDPT CLMILERMLK TCLYRVTKCN RAEIALTLLR 60 KNKNGFDIVI SDVHMPDMNG FKLLEHVGLE MDLPVIMMSA DDSKSVVLKG VTHGAVDYLI 120 KPVRIEALKN IWQHVVRKKQ NVSEHSGSVE ETGGDRQQQQ QRDDDDDGGG DNNSSSGNNE 180 GNLRKRKEEE QGDDKEDTSS LKKPRVVWSV ELHQQFVAAV NHLGVDKAVP KKILEMMNVQ 240 GLTRENVASH LQKYRIYLKR LGGVSQGNMN HSFMTGQDPS YGPLNGFDLQ GLATAGQLQA 300 QSLAQLQAVG LGQSSSPLIK PGITSVDQRS FKQLASRFGD GHGPMMMNGG GGNKQTSLLH 360 GVPTGHMRLQ QQQMAGMRVA GPSMQQQQQQ SMLSRRSVPE TRSSRVLPAA THSAFNNSFP 420 LASAPGMMSV SDTKGVNEFC NPSYDILNNF PQQQHHNNNN SVNEWDVRNV GMVFNSHQDN 480 TTSAAFSTSE AYSSSSTHKR KREAELVVEH GQNQQQPQSR SVNPMNQIYM NDGGSVRMKT 540 ETVTCPPQAT TMFHEQYSNQ DDLLSDLLKQ EGLLDTEFDF EGYSFDNILV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-23 | 199 | 261 | 1 | 63 | ARR10-B |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00151176001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189632 | 0.0 | AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence. | |||
GenBank | AC232469 | 0.0 | AC232469.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026A07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013737391.1 | 0.0 | two-component response regulator ARR2 isoform X2 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A3P6AEU7 | 0.0 | A0A3P6AEU7_BRACM; Two-component response regulator | ||||
STRING | Bra012743.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2403 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 106440308 |