PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00150878001

Common Name

GSBRNA2T00150878001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 286aa MW: 31965.4 Da PI: 9.9723

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00150878001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	60.6	7.3e-19	1	110	1	92
GAGA_bind 1 mdddgsre..rnkg.yye.................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaer 70 m++ g+++ r k+ yy+ ++++l +++++ms++aerda+++ern al++kk+a+a+rd+a+ qrdkal+er GSBRNA2T00150878001 1 MESGGQYDngRYKPdYYKgtppsvwnmmpqhqikeQHNALV--MNKKIMSILAERDAALKERNEALAAKKEALAARDEALEQRDKALSER 88 889999988999999999********9887765446666..99***************************************** PP GAGA_bind 71 nkalverdnkllalllvensla 92 ++a++er+ +l al + e++ GSBRNA2T00150878001 89 DNAIMERETALNALHYPEKNNL 110 **********9998777644 PP
2	GAGA_bind	247.1	1.1e-75	144	285	158	301
GAGA_bind 158 kpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247 ++++k++k+ kk +++ ++ ++++ ++ +++++ +++ln v++De+t+PvP+C+CtG+ rqCYkWG+GGWqS+CCttt+S++PLP++ GSBRNA2T00150878001 144 TKRKKETKQGKKVGDDLNRLAASPG--KKCRKDWDVNEVGLNLVAFDETTMPVPMCTCTGTARQCYKWGSGGWQSSCCTTTLSQHPLPQM 231 2222223344555677777777777..57*********************************************************** PP GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +++r++R++grKmS+++f++lL++La+eG dls pvDLkd+WA+HGtn+++ti+ GSBRNA2T00150878001 232 PNKRHSRMGGRKMSGNVFSRLLSRLAGEGQDLSSPVDLKDYWARHGTNRYITIK 285 ***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.8E-144	1	285	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.4E-86	18	285	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MESGGQYDNG RYKPDYYKGT PPSVWNMMPQ HQIKEQHNAL VMNKKIMSIL AERDAALKER 60 NEALAAKKEA LAARDEALEQ RDKALSERDN AIMERETALN ALHYPEKNNL NYILSCAKRG 120 GTEGRSHPPR PPPVSPIPAD KNPTKRKKET KQGKKVGDDL NRLAASPGKK CRKDWDVNEV 180 GLNLVAFDET TMPVPMCTCT GTARQCYKWG SGGWQSSCCT TTLSQHPLPQ MPNKRHSRMG 240 GRKMSGNVFS RLLSRLAGEG QDLSSPVDLK DYWARHGTNR YITIK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269\|PubMed:14731261}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00150878001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109516.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like
Swissprot	F4JUI3	1e-163	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	A0A397YJF4	0.0	A0A397YJF4_BRACM; Uncharacterized protein
TrEMBL	M4D2L7	0.0	M4D2L7_BRARP; Uncharacterized protein
STRING	Bra010720.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38910.2	1e-132	basic pentacysteine 5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]