PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00150779001

Common Name

GSBRNA2T00150779001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 239aa MW: 26160.5 Da PI: 4.4542

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00150779001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.2e-05	185	222	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + Lr+++P + ++ a++L +Av+Y+ksL GSBRNA2T00150779001 185 RKKKMKKMMGMLRKIVPGG-----EEMNTASVLDEAVQYLKSL 222 77899999999****85.....69*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.198	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-7	185	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-7	186	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MQNNQYPHFS DEMGDGNMNF PYSSSFDDLF PPCAKLPFHG VELQPSPVCP KNFVIFDQTY 60 DHSQVMYHPD LTPRLVNSGL ASTFQNEYAG GSYGYNYGQE VYVSSSYQED PNEIDALLST 120 DEDDEGEEDG GDSEEVSTAR NASRDYGNIS AESCCSSYGY NSSRRKQSSS GSAASSSNND 180 GKGGRKKKMK KMMGMLRKIV PGGEEMNTAS VLDEAVQYLK SLKLEAQKLG VGHFSNQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	189	RRKQSSSGSAASSSNNDGKGGRKKKMK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.19539	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00150779001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189366	0.0	AC189366.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046G20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630148.1	1e-144	PREDICTED: transcription factor bHLH144-like
Swissprot	Q9ASX9	1e-105	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A0D3BIZ2	1e-142	A0A0D3BIZ2_BRAOL; Uncharacterized protein
STRING	Bo3g146500.1	1e-143	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	3e-95	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]