PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150330001
Common NameGSBRNA2T00150330001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 181aa    MW: 19436.9 Da    PI: 9.0605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150330001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-212271255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++ a+++++g
  GSBRNA2T00150330001 22 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDSAAREFRG 71
                         6********.**********8...557************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-382285IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-232281IPR016177DNA-binding domain
PfamPF008471.1E-142271IPR001471AP2/ERF domain
PROSITE profilePS5103224.2892279IPR001471AP2/ERF domain
CDDcd000188.25E-322279No hitNo description
Gene3DG3DSA:3.30.730.106.9E-332279IPR001471AP2/ERF domain
PRINTSPR003677.5E-122334IPR001471AP2/ERF domain
PRINTSPR003677.5E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSPRLENVGH ADAAGGKVKE VHYRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEEAAR  60
AYDSAAREFR GSKATTNFPF SGGVDAGNAS GTHVTAREGV CGNNVSGVLA PAVTGFFLDL  120
PHATASREEL VRGFPVRFEP MEMGLSIGLR TTVEVKRDAA DYKLGRDLNL ELSLAPSMDV  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-222280261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-221980264ATERF1
3gcc_A2e-221980264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150330001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013719213.11e-129ethylene-responsive transcription factor 9-like
SwissprotQ9FE674e-54ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A397XHP61e-122A0A397XHP6_BRACM; Uncharacterized protein
TrEMBLM4DFJ31e-122M4DFJ3_BRARP; Uncharacterized protein
STRINGBra015266.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-45erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]