PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150119001
Common NameGSBRNA2T00150119001, LOC106429607
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 456aa    MW: 50822.8 Da    PI: 5.7121
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150119001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-083033401954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  GSBRNA2T00150119001 303 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 340
                          554459******************************88 PP
2BELL129.11.5e-41165236172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  GSBRNA2T00150119001 165 ERQELQNKLSKLLSILDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 236
                          79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-68105234IPR006563POX domain
PfamPF075261.4E-47112233IPR006563POX domain
Gene3DG3DSA:1.20.5.3504.3E-4121185No hitNo description
PROSITE profilePS5007111.531281344IPR001356Homeobox domain
CDDcd000863.09E-11284345No hitNo description
SMARTSM003897.0E-9284348IPR001356Homeobox domain
SuperFamilySSF466894.02E-17285351IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-27287350IPR009057Homeodomain-like
PfamPF059208.3E-18301340IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSTYYKSSSG SSDIYSRPNA SEFVPENAMI YTNPAVSYFP GEANNVSASK EIQELSSFGG  60
VASQAVEIQD SGSWRDQEDR TCFPVMMRPT TGQGLSLGIS SQIETQVVSG FHNSKYLEAA  120
QELLDEAVNV KKALKQFQPE GDKTEEDKEK NLQESITNPD LPQAERQELQ NKLSKLLSIL  180
DEVDRRYKQY YHQMQIVVSS FDVIAGCGAA KPYTALALQT ISRHFRCLRD AISGQILVIR  240
RSLGGEHDGL DGRGVGISRL RNVDQKVRQQ RALQRLGVMQ PHAWRPQRGL PDSSVLILRA  300
WLFEHFLHPY PKDSDKIMLA RQTGLSRGQV SNWFINARVR LWKPMVEEMY KEEFTDALEE  360
NVTNLYSGNN RPETTESQEQ QLVSSSNNGG ASTSAVARGG EDQLMMVTEM TRNGSGGMSL  420
TLGIPDNYEN SFQYLNSGNG QHRLGSSQLL QDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-15290348563Homeobox protein Meis2
3k2a_B5e-15290348563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.51080.0leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150119001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628973.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_013725816.10.0BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A3P6BF630.0A0A3P6BF63_BRAOL; Uncharacterized protein
STRINGBra013076.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]