PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00149695001 | ||||||||
Common Name | GSBRNA2T00149695001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 26420.7 Da PI: 7.0618 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 53 | 102 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+fgtaeeAa a+++a+ +++g GSBRNA2T00149695001 53 LYRGVRQRH-WGKWVAEIRLPKS---RTRLWLGTFGTAEEAALAYDQAAFQIRG 102 59******9.**********954...4***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.92E-32 | 52 | 111 | No hit | No description |
SMART | SM00380 | 1.5E-35 | 53 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-31 | 53 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.221 | 53 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-21 | 53 | 111 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-11 | 54 | 65 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-15 | 54 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MESKPLGLNQ LTPYQTYQIQ KQLNHRRSTT STLSPNQILM KKLSPSSSNS QKLYRGVRQR 60 HWGKWVAEIR LPKSRTRLWL GTFGTAEEAA LAYDQAAFQI RGDIGKLNFP DIKHEEINSL 120 PSSVDAKLQA ICHSLRKTEE TCSVSDKTAD ISSVSKLFLI KTEHMEMKFS DDSPRNDKNS 180 SWDESKLESS SSEQGITFLE FSDSELDEIG RFGLVKFPSV EIDWDAISKL SES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-21 | 52 | 110 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00149695001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635195.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor ERF056 | ||||
Swissprot | Q9SIE4 | 1e-115 | ERF56_ARATH; Ethylene-responsive transcription factor ERF056 | ||||
TrEMBL | A0A0D3C148 | 1e-159 | A0A0D3C148_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g149390.1 | 1e-160 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2680 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22200.1 | 1e-101 | ERF family protein |
Publications ? help Back to Top | |||
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