PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149693001
Common NameGSBRNA2T00149693001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 338aa    MW: 37121.3 Da    PI: 5.7053
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149693001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.16e-19249283135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  GSBRNA2T00149693001 249 CSHCGVQKTPQWRAGPKGAKTLCNACGVRYKSGRL 283
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-9915337IPR016679Transcription factor, GATA, plant
SuperFamilySSF577163.85E-14241305No hitNo description
PROSITE profilePS5011412.189243279IPR000679Zinc finger, GATA-type
SMARTSM004015.2E-16243297IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-15247281IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.13E-14248296No hitNo description
PfamPF003206.5E-17249283IPR000679Zinc finger, GATA-type
PROSITE patternPS003440249274IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MERMEAGLKS SIRQEMALKT TPPVYEEFHA VTAAQNDFSS EDFSVDDLLD LSNDDVFVEE  60
EEAAEPKAQQ EVLLCVSSEQ PNDVEEVLPP GNEFGSLPSN QLPVPMDELA DLEWLSHFVD  120
DSFTEYSAPN LTGTPAEKPA WLTGDRKHPV TPASEESCFK SPLPAKARSR RYRNGLKAWS  180
LGSSGPSSSS STSSSSSSSG LSSPWFSGAE LLEPDFTSEK PPVPKKYKKR SAESVFSAKL  240
QQQQPQRRCS HCGVQKTPQW RAGPKGAKTL CNACGVRYKS GRLLPEYRPA CSPTFSSELH  300
SNHHRKVIEM RRKKEPTDDS STGLNQPVKT PQAVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.157070.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149693001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894150.0AC189415.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138942.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH571e-161GATA5_ARATH; GATA transcription factor 5
TrEMBLM4DBL00.0M4DBL0_BRARP; GATA transcription factor
STRINGBra013870.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-151GATA transcription factor 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]