PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00149279001

Common Name

GSBRNA2T00149279001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 349aa MW: 39287.6 Da PI: 9.6362

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00149279001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	105	165	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss GSBRNA2T00149279001 105 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 165 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	104	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-33	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MQRGKIYYYL LFNKLCFLLK IRYFFFVDAT KWTQDFQEMI NVKPMEQIIS NTSNNTSQQQ 60 QQQQQQQTFI ATTARPNPNA SNVGSGAGND NNTATAMEST RKARPQEKVN CPRCNSTNTK 120 FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR NVPVGGSSRK NKRSSTPLAS PSNPKLPDLN 180 PPFFFATQIP NKSSKDLNLL SFPVMQDHHH GMSQFLHMPK IENNNTSSSI YASSSHGASS 240 RGMNTLLPGQ MMDSNSVLYS SLGFPTMADY KQSNNNLSFS IDHHQGIGHN TINNNHRAED 300 NNHADDMNGA SRVLFPFSDT KEFSSTNQEK SHNTYWSGMF SNTGGSSW*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MQRGKIYYYL LFNKLCFLLK IRYFFFVDAT KWTQDFQEMI NVKPMEQIIS NTSNNTSQQQ  60
QQQQQQQTFI ATTARPNPNA SNVGSGAGND NNTATAMEST RKARPQEKVN CPRCNSTNTK  120
FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR NVPVGGSSRK NKRSSTPLAS PSNPKLPDLN  180
PPFFFATQIP NKSSKDLNLL SFPVMQDHHH GMSQFLHMPK IENNNTSSSI YASSSHGASS  240
RGMNTLLPGQ MMDSNSVLYS SLGFPTMADY KQSNNNLSFS IDHHQGIGHN TINNNHRAED  300
NNHADDMNGA SRVLFPFSDT KEFSSTNQEK SHNTYWSGMF SNTGGSSW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14494	1e-71	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00149279001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN979481	0.0	JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138746.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like isoform X1
Swissprot	Q43385	1e-171	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A397ZGR6	0.0	A0A397ZGR6_BRACM; Uncharacterized protein
STRING	Bra014418.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-168	Dof family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]