PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149190001
Common NameGSBRNA2T00149190001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 551aa    MW: 60290.6 Da    PI: 4.4412
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149190001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2969.8e-911985493374
                 GRAS   3 elLlecAeavssgdle...laqalLarlselaspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                          e+L+++A  ++  d++   laq +Larl+++ s++ +    p+qR+a+y+te L++ l++         +ps   +++   ++aa+++fs
  GSBRNA2T00149190001 198 EQLFNAAAELTGTDNNspvLAQGILARLNHNLSNNLNnpkpPFQRAAFYVTESLQSLLQD--------SQPS---PHSLLLKIAAYRAFS 276
                          67777777777655555889***********77666446779*****************9........3344...445999********* PP

                 GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgv 174
                          e+sP+l+f ++taNq+Ile++++ +r+Hi+Dfd+++G+QW +L+q+La+R+ +  sl+iT ++sp+++ ++ el+ t+e+L+ fA e+gv
  GSBRNA2T00149190001 277 ETSPFLQFVNFTANQTILESLDRFDRIHIVDFDVGYGGQWSSLIQELANRS-SLSSLKITSFSSPSTVsDEFELRFTEENLRAFAGETGV 365
                          **************************************************6.5689**********9999******************** PP

                 GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                          +fe ++l +++l +  l+ +r +++Ea+aVnl ++             + + +L+++k++sP+vvv+++      +++F + +++al+yy
  GSBRNA2T00149190001 366 TFEMEMLNMETLLNPPLSLIRSSEKEAIAVNLPISSVIS--------GYLPLILRFLKQISPNVVVCSDT---IPDAPFPNAVVDALQYY 444
                          *******999***********************954443........36677***************986...5778************* PP

                 GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                          ++l++sle+   + +e+ +++Er++++++ + +++++ ++    +e+   Wr+ ++++GF++v++s++a++qa++ll++ +++g+++e++
  GSBRNA2T00149190001 445 TSLLESLESP-NSSQEAVTSIERFCVQPWMQRLLTNRYRW----MEKSPPWRSLFGQCGFTAVAMSQTAETQAEYLLQRNPMRGFHLEKR 529
                          *******988.566688999********************....********************************************** PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          + slvl+W++r+Lv+vSaW+
  GSBRNA2T00149190001 530 QSSLVLCWQKRELVAVSAWK 549
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.617171529IPR005202Transcription factor GRAS
PfamPF035143.4E-88198549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MPLPFEELQG LGFSYGTRED LCCVVGVNNG SSEPTSVLDS SRSPSPFLSS STTTLSSSHG  60
GPGAAAGKCN QMTFEDLDGV LSGSPGQEQS IFRLIMSDPG SEFTGFDPGS GSDPNPLFGY  120
GFPLDEPPPP PEEEDVKFQI TADPDPDPCF FSGGSSPPAK RLNSGQPVSH HWGFPFSDPG  180
HDPPQKLAGP ESTAVITEQL FNAAAELTGT DNNSPVLAQG ILARLNHNLS NNLNNPKPPF  240
QRAAFYVTES LQSLLQDSQP SPHSLLLKIA AYRAFSETSP FLQFVNFTAN QTILESLDRF  300
DRIHIVDFDV GYGGQWSSLI QELANRSSLS SLKITSFSSP STVSDEFELR FTEENLRAFA  360
GETGVTFEME MLNMETLLNP PLSLIRSSEK EAIAVNLPIS SVISGYLPLI LRFLKQISPN  420
VVVCSDTIPD APFPNAVVDA LQYYTSLLES LESPNSSQEA VTSIERFCVQ PWMQRLLTNR  480
YRWMEKSPPW RSLFGQCGFT AVAMSQTAET QAEYLLQRNP MRGFHLEKRQ SSLVLCWQKR  540
ELVAVSAWKC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2924154857378Protein SCARECROW
5b3h_A4e-2924154856377Protein SCARECROW
5b3h_D4e-2924154856377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149190001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013707740.10.0scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLA0A397ZGY40.0A0A397ZGY4_BRACM; Uncharacterized protein
STRINGBo4g104900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]