PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149057001
Common NameGSBRNA2T00149057001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 261aa    MW: 29590.3 Da    PI: 7.552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149057001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-202677156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+g+
  GSBRNA2T00149057001 26 CRYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDKAALKLFGH 77
                         78*****999.**********965...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-302686No hitNo description
PfamPF008471.5E-132677IPR001471AP2/ERF domain
SMARTSM003801.6E-352790IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-222785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-292785IPR001471AP2/ERF domain
PROSITE profilePS5103223.2222784IPR001471AP2/ERF domain
PRINTSPR003672.9E-102839IPR001471AP2/ERF domain
PRINTSPR003672.9E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEKPSSMKQW KKGPARGKGG PQNALCRYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA  60
EEAAMAYDKA ALKLFGHDAY LNLPHLQQRK QGPSVNNTQR FKWVPSKKFI SMFPSRGLLN  120
VNAQPSLHII QQRLDELKRN GLLSQSYSSS PSSASFLDEQ KKPEMDLNEF LQQMGILKDK  180
SQGEASEVAV SHYTPPWKEQ EENGGPFTDQ SLSWETMIDE MPGSETSAMH FDCSNFGSYD  240
DLEDDLGFPY IWNFCGSLDE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-182884360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149057001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894690.0AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139025.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
RefseqXP_013675410.10.0dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX51e-133DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A397ZPQ60.0A0A397ZPQ6_BRACM; Uncharacterized protein
STRINGBra014617.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-123ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]