PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00148696001
Common NameGSBRNA2T00148696001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 301aa    MW: 32011.9 Da    PI: 6.5266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00148696001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.7e-12113158555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  GSBRNA2T00148696001 113 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 158
                          99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-17106168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.15E-12106162No hitNo description
PROSITE profilePS5088817.028108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16110168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9113158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MHEEAKEEDR RQEEMENGNG EGKGEFITQN NNGFFDSMSM LSSLPPPWGS SLPPSPPPPH  60
SLLHALTESG GPTTGSQDGL QHAQGTVSTT TSPPVARQKP RVRARRGQAT DPHSIAERLR  120
RERIAERMKS LQELVPNTNK TDKASMLDEI IEYVRFLQLQ VKVLSMSRLG AARTVGPRLN  180
GLTSEVGGRL NALSVPSNGV VNGNGNATGS SNESLRSTEQ RVAKLMEEDM GSAMQYLQGK  240
GLCLMPIALA TAMSSSSAHS RGALFNPISN IVATEEANVV VAAAPEASSP MDDVSASNKA  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.246420.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes of the root maturation zone. Detected constitutively in flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:16581911}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00148696001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894510.0AC189451.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB071P24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740270.20.0transcription factor bHLH82
SwissprotQ9LSQ31e-157BH082_ARATH; Transcription factor bHLH82
TrEMBLM4CRE70.0M4CRE7_BRARP; Uncharacterized protein
STRINGBra006788.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-99LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]