PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00148645001
Common NameGSBRNA2T00148645001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 247aa    MW: 27934.5 Da    PI: 4.4855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00148645001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-135599655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            Er+RR+++N++++ Lr ++P+      +K++Ka+i + A+ YI+ Lq
  GSBRNA2T00148645001 55 IVLERNRRQKLNQRLFALRAVVPNI-----TKMDKASIIKDAISYIQGLQ 99
                         568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9234998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-125299No hitNo description
SuperFamilySSF474591.01E-1652114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-115599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-1755114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDDINQEFSN YWEPNSFLQN EEFKYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVLERN  60
RRQKLNQRLF ALRAVVPNIT KMDKASIIKD AISYIQGLQY EETKLEAEIR ELESTPKSSL  120
SFGKDFDRDL LVPVTSKRMK QLDSGSSRSL IEVLELKVTF MGERTMVVNV TCNKRTDTMV  180
KLCEVFESLN LKIITSNLNS FSGMIFNTLF IEADEEEQDV LRLKIESGIG AYNGAQSPTW  240
SMESLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14581081363Transcription factor MYC2
5gnj_B2e-14581081363Transcription factor MYC2
5gnj_E2e-14581081363Transcription factor MYC2
5gnj_F2e-14581081363Transcription factor MYC2
5gnj_G2e-14581081363Transcription factor MYC2
5gnj_I2e-14581081363Transcription factor MYC2
5gnj_M2e-14581081363Transcription factor MYC2
5gnj_N2e-14581081363Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00148645001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132143.11e-180PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-160BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A398A1N11e-180A0A398A1N1_BRACM; Uncharacterized protein
STRINGBra006831.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-147bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]