PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00148177001 | ||||||||
Common Name | GSBRNA2T00148177001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 28020.4 Da PI: 7.1912 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00055 | 116 | 138 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GSBRNA2T00148177001 116 YECKTCNRTFPSFQALGGHRASH 138 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 160 | 182 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GSBRNA2T00148177001 160 HECSICGSEFTSGQALGGHMRRH 182 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.2E-13 | 115 | 140 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.15E-7 | 115 | 182 | No hit | No description |
PROSITE profile | PS50157 | 10.554 | 116 | 143 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 116 | 138 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 118 | 138 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.743 | 160 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 160 | 182 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.7E-11 | 160 | 183 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 162 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MMGQDHEVGS DQTQIIKGKR TKRQRSSSST FLVAAAATTI TSTSSSADGE RTASDEYNSV 60 VSSPVTTTDC TEEEEDMAIC LIMLARGAAP SPPLPDLKNS TKTDKNLHLK TSFYVYECKT 120 CNRTFPSFQA LGGHRASHKK PRASIDEKAK VPLTQLKSIH ECSICGSEFT SGQALGGHMR 180 RHRTVTNVVS SPVSTAEVSR NSTEEETENL SRSMEQRKYL PLDLNLPAPE DDLRESKFQR 240 IVFSATTPAL IDCHY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.24905 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00148177001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009103654.1 | 1e-165 | PREDICTED: zinc finger protein ZAT5 | ||||
Refseq | XP_013651797.1 | 1e-165 | zinc finger protein ZAT5-like | ||||
Swissprot | Q681X4 | 1e-119 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | M4D662 | 1e-163 | M4D662_BRARP; Uncharacterized protein | ||||
STRING | Bra011970.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5862 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-105 | C2H2 family protein |
Publications ? help Back to Top | |||
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