PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00148012001

Common Name

GSBRNA2T00148012001, LOC106390061

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BES1

Protein Properties

Length: 308aa MW: 32896.6 Da PI: 8.4755

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00148012001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	191.8	2.5e-59	2	136	1	133
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasas 89 ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkgs+++ e++e+++ sa++s GSBRNA2T00148012001 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEQDGTTYRKGSSRPvERMEIGVGSATTS 91 5899*******************************************************************9999********* PP DUF822 90 pesslqsslkssalaspvesysas.pksssfpspssldsislasa 133 p++s++ s++ss++ sp + +s +s +p ++l+++s++sa GSBRNA2T00148012001 92 PCASYNPSPVSSNFMSPSYANLTSgDGQSLIPWLKHLSTTSSSSA 136 ****999999999997554444145566666666666655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.0E-53	3	133	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVEQDGTTY RKGSSRPVER MEIGVGSATT SPCASYNPSP VSSNFMSPSY ANLTSGDGQS 120 LIPWLKHLST TSSSSASSSS RLPSFMYLPG GSISAPVTPP LSSPTARGMN QINNSFFVSS 180 TPPSPTRQQT VPGSEWFAGI QLAQSVPASP TFSLVSRNPF GFREDQLASA GGGGGSRMWT 240 PGQSGTCSPA IPQTGDVPMS EAVAPPEFAF GSNANGLVKA WEGERIHEES GSDDLELTLG 300 NSSTRCN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	5e-22	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	5e-22	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	5e-22	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	5e-22	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.22597	9e-72	root\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00148012001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590172.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4
Refseq	XP_013685899.1	0.0	BES1/BZR1 homolog protein 4
Swissprot	Q9ZV88	1e-161	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A0D3D1M4	0.0	A0A0D3D1M4_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G203	0.0	A0A3P6G203_BRAOL; Uncharacterized protein
STRING	Bo6g122190.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-154	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Entrez Gene	106390061

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]