PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147801001
Common NameGSBRNA2T00147801001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 981aa    MW: 107915 Da    PI: 8.5999
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147801001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.1e-40121197278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  GSBRNA2T00147801001 121 CQVDNCNEDLSVAKDYHRRHKVCEVHSKATKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 197
                          **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-33113182IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.197118195IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.54E-38119199IPR004333Transcription factor, SBP-box
PfamPF031102.4E-29121194IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.64E-8745873IPR020683Ankyrin repeat-containing domain
CDDcd002048.24E-7785871No hitNo description
Gene3DG3DSA:1.25.40.201.2E-5785872IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502979.33818871IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MDEVGPQVAG PVSIHHPIGR KRDLYYQMSN RQPYWLVPPQ PQNDWNPKMW EWDSQRFEAK  60
PVEAAEQSDL QVGNGTQFDL NANNNNNGGL SLDLNLSTVE ETTRPSKKVK SGSPGRNYPK  120
CQVDNCNEDL SVAKDYHRRH KVCEVHSKAT KALVGNQMQR FCQQCSRFHL LSEFDEGKRS  180
CRRRLAGHNR RRRKTQPEEV ASGGAVAASD QNKANVDVMA LLTALACAQG RNGSQSNGSP  240
AVPQREQLLQ ILNKINALPL PMDLVSKLNS IGVLARKNLD QPMNSRYDVN GAASSPSTMD  300
LLAVLSSTLG SSAPEAIAFL SQGGFGSNDK TTLTSPDQAT ATNLEKRTLE FPPFVGGERT  360
SSSNNPSPSQ ETRSSSLSLQ LFTSSPEDER QQPTVASLGK YYSSASSNPV EDRSPSSSPV  420
MQELFPMQTS PETMRSNNCK NSSPCPRNSC LPLELFGGSN RGAAAANPSY ASSGSDYSPP  480
SLNSDSQDRT GKIVFKLLGK DPSQLPGTLR TEISSWLSSI PSEMESYIRP GCVILSVYVA  540
MPASAWEQLE ENLLQRVSSL VQDSEFWSST RFLVNTGRQL ASYKHGRIRL SKSWRTLSSP  600
ELITVSPVAV VAGEETTLVV RGRSLTNDGI SFRCAHMGNY TSVEVTGTAH RSTKYDELNV  660
NRFKVNTSGS LGRCFLEVEN GFRSDSFPLI IANATICKEL NRLEDEFHPS SREEVLCFLN  720
ELGWLFQKKC RSESDFSLSR FKFLLVSSVE RDYSSLVRAL LDMMVERDGM MSKESLDMLA  780
EIQLLSRAVK RKSTKMAETL IHYSAKRFIF LPSVKGPGGI TPLHLAASTS GSEDMIDVLT  840
NDPQEIGLSS WNTLIDASGQ TPFSYAAMRN NHGYNTLVSR KLADKRNGQI SLNIENGIDQ  900
IGVSKRLSSE LKRSCNTCAS VALKYQKKVS GTRRLFPTRI IHSMVAVATV CVCVCVFMHA  960
FPIVRQGSHF SWGGLDYGSV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-30111194384squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.169982e-87leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147801001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723517.10.0squamosa promoter-binding-like protein 16
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLA0A0D3D1740.0A0A0D3D174_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G1L70.0A0A3P6G1L7_BRAOL; Uncharacterized protein
STRINGBo6g120690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]