PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00147659001

Common Name

GSBRNA2T00147659001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 511aa MW: 56641.7 Da PI: 6.4051

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00147659001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.1	2e-14	128	166	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk s+Clk+YCeCfa+g++C+ C+C +C+N+ e GSBRNA2T00147659001 128 KQKHCNCKASRCLKLYCECFASGSYCNG-CNCVNCQNNLE 166 79************************.******976 PP
2	TCR	51.7	1.8e-16	212	251	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeC++a++ Cse+C+C+dCkN e GSBRNA2T00147659001 212 KHSKGCHCKKSGCLKKYCECYQANVLCSENCRCQDCKNFE 251 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.1E-16	127	167	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.555	128	252	IPR005172	CRC domain
Pfam	PF03638	6.5E-11	129	164	IPR005172	CRC domain
SMART	SM01114	5.3E-19	212	253	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.3E-12	215	250	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MEKSDHDLSS NQNPLARQLD FSVPAAAAET KMIDSSQETE KKQSQSLLLD SQSYLEDQRD 60 EELSESSQPT EEQHRLGVKS LEEPSATEDV TPPPQKPPIH RFGHPLEKCR VSKQEQMEAE 120 SKDGTPSKQK HCNCKASRCL KLYCECFASG SYCNGCNCVN CQNNLENESA RQEAITGTLE 180 RNPDAFKPKI AGSPHGINDL QEDVRQLLIL GKHSKGCHCK KSGCLKKYCE CYQANVLCSE 240 NCRCQDCKNF EGSEERSALL HGSHHVSETY IQQTTNAALS RAVSTSGFLN TPESRKRKSK 300 DASSAVPHLV QNQAVNRVIR NGDTSLFSIP NNKAVSGSPT CTYRSSLSNT IQPRHVKDLC 360 TLLVATSLDV ANKYSDKRRK HEKDPSLDPA QRDANEINDS PDCVLDSSRM DEKPVSPATR 420 ALMCDDEHVI TSEKEASARV KTSEEKEDAD TSTEIYLEKE RQILSSFRDF LIQLSNRGSI 480 KAGANTKTST NPSRKEPQDE EQSHRDSSLG *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MEKSDHDLSS NQNPLARQLD FSVPAAAAET KMIDSSQETE KKQSQSLLLD SQSYLEDQRD  60
EELSESSQPT EEQHRLGVKS LEEPSATEDV TPPPQKPPIH RFGHPLEKCR VSKQEQMEAE  120
SKDGTPSKQK HCNCKASRCL KLYCECFASG SYCNGCNCVN CQNNLENESA RQEAITGTLE  180
RNPDAFKPKI AGSPHGINDL QEDVRQLLIL GKHSKGCHCK KSGCLKKYCE CYQANVLCSE  240
NCRCQDCKNF EGSEERSALL HGSHHVSETY IQQTTNAALS RAVSTSGFLN TPESRKRKSK  300
DASSAVPHLV QNQAVNRVIR NGDTSLFSIP NNKAVSGSPT CTYRSSLSNT IQPRHVKDLC  360
TLLVATSLDV ANKYSDKRRK HEKDPSLDPA QRDANEINDS PDCVLDSSRM DEKPVSPATR  420
ALMCDDEHVI TSEKEASARV KTSEEKEDAD TSTEIYLEKE RQILSSFRDF LIQLSNRGSI  480
KAGANTKTST NPSRKEPQDE EQSHRDSSLG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-33	129	261	11	132	Protein lin-54 homolog
5fd3_B	4e-33	129	261	11	132	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	293	298	SRKRKS

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00147659001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC172883	1e-107	AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
GenBank	AC189321	1e-107	AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151097.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 7
Refseq	XP_013643763.1	0.0	protein tesmin/TSO1-like CXC 7
Swissprot	F4JY84	0.0	TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBL	M4D061	0.0	M4D061_BRARP; Uncharacterized protein
STRING	Bra009859.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13463	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25790.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]