PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147635001
Common NameGSBRNA2T00147635001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 190aa    MW: 21421.3 Da    PI: 9.7937
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147635001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19556156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                         ++++GVr++  +g+Wv+eIr+p        +r++lg+f taeeAaka+++a+  ++g+
  GSBRNA2T00147635001  5 KKFRGVRQRQ-WGSWVSEIRHP-----LfkRRVWLGTFNTAEEAAKAYDQAAVIMNGH 56
                         59*****999.**********7.....335**********************988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-30564No hitNo description
PfamPF008476.2E-12655IPR001471AP2/ERF domain
SMARTSM003804.5E-36669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31663IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-20664IPR016177DNA-binding domain
PROSITE profilePS5103221.364663IPR001471AP2/ERF domain
PRINTSPR003672.4E-10718IPR001471AP2/ERF domain
PRINTSPR003672.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVHSKKFRGV RQRQWGSWVS EIRHPLFKRR VWLGTFNTAE EAAKAYDQAA VIMNGHNAKT  60
NFPVIKSNDS DSSDINSLSR SPKWLSEHLN AKLRKNCKDQ TPYLTCLRLD NDSSHIGVWQ  120
KRAGSKTTQN WVKLVELSDG VNARAGDVGI NKMKKKIDDV EEEDQVAMQM IEELLNWTCP  180
ASASISGLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147635001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151068.11e-140PREDICTED: ethylene-responsive transcription factor SHINE 3
RefseqXP_022543401.11e-140ethylene-responsive transcription factor SHINE 3-like isoform X2
SwissprotQ3E9581e-110SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A397Z1D71e-139A0A397Z1D7_BRACM; Uncharacterized protein
STRINGBo7g096000.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.25e-96ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  3. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]