PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147620001
Common NameGSBRNA2T00147620001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 300aa    MW: 33430.6 Da    PI: 6.5163
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147620001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.45e-082362692154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  GSBRNA2T00147620001 236 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 269
                          469*****************************87 PP
2ELK29.41.8e-10190211122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  GSBRNA2T00147620001 190 ELKHELKQGYKEKIVDIREEIL 211
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-192569IPR005540KNOX1
PfamPF037906.8E-182868IPR005540KNOX1
SMARTSM012562.0E-2981136IPR005541KNOX2
PfamPF037911.6E-2185135IPR005541KNOX2
PfamPF037896.4E-7190211IPR005539ELK domain
SMARTSM011886.1E-4190211IPR005539ELK domain
PROSITE profilePS512139.969190210IPR005539ELK domain
PROSITE profilePS5007111.726210273IPR001356Homeobox domain
SuperFamilySSF466892.87E-16212276IPR009057Homeodomain-like
SMARTSM003892.4E-11212277IPR001356Homeobox domain
CDDcd000862.49E-11213274No hitNo description
Gene3DG3DSA:1.10.10.602.1E-25217274IPR009057Homeodomain-like
PfamPF059207.3E-18230269IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MLSGGENKND GGGGGGEGVV SWQNARHKAE ILSHPLYEQL LSAHVACLRI ATPVDQLPRI  60
DAQLAQSQHV VAKYSTLGGG GQGLVGDDKE LDQFMTHYVL LLCSFKEQLQ QHVRVHAMEA  120
VMACWEIEQS LQSLTGVSPG EGMGATMSDD EDEQVESDAN MFDGGLDVLG FGPLIPTESE  180
RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP  240
TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTV LKNKRKSNAG DNSGRERFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13213277872Homeobox protein PKNOX1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.230581e-138leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147620001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529660.0AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459220.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A3P5YJX00.0A0A3P5YJX0_BRACM; Uncharacterized protein
STRINGAT5G25220.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]