PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00147403001

Common Name

GSBRNA2T00147403001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 873aa MW: 96021.7 Da PI: 4.9519

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00147403001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.6e-28	598	648	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i le+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ GSBRNA2T00147403001 598 EKIIGLEVLQQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 648 7889*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	8.9E-4	190	284	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.642	587	668	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-24	601	648	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.28E-23	764	859	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-23	772	855	No hit	No description
PROSITE profile	PS51745	26.993	774	857	IPR000270	PB1 domain
SMART	SM00666	6.8E-28	774	857	IPR000270	PB1 domain
Pfam	PF00564	4.8E-16	775	856	IPR000270	PB1 domain
CDD	cd06407	4.31E-42	775	856	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MEDDGGSDGG EGNGGFSPNS SFGAFPEMPM DLDLDELFFD GCWLETTDLK QSEETASASN 60 AMNDNTPFLY FAENPFQENV SNEETERRAN QEPLNQVATS SEQAEKFLLE EAEVARRWWI 120 APRGSEGPSS SVKERLLRAI SGLDEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK 180 YSSLAKYRHV SETYNFPADE GSKDVGLPGR VFLQKLPEWT PDVRFFRSEE YPRIKEAQKC 240 DVRGSLAVPV FERGSGTCLG VVEIITTTQK MNYRPELENI CKALEAVDLR SSSNLKTPST 300 EFLQVYNDFY YAALPEISDF LASVCRSYDL PLALSWAPCD RQGKGGSRHS DENFSQCVST 360 IDSACFVLDE QSKCFLEACS EYHLLQGEGM VGKAFKETKL FFVPEVTIFS KTNYALSHHA 420 KVSGLHAALA VPLKGKSNGL VEFVLEFFFP KSCIDTEAKE KMLKSLSVTL QQDFRSSNLV 480 IDKDLELEVV LPDGEDMVLS ESPVNGAETE GSLREVHMQD SSQMIKANEK GKDKKDESKL 540 SSGMDNSQLD SVPNNVPSGA EPGGLRVDAG PSTEPASTGG GSMLGSRRPG DKRRSKNEKI 600 IGLEVLQQYF AGSLKDAAKS IGVCPTTLKR ICRHHGITRW PSRKIKKVGH SLKKLQVVMD 660 SVQGAQGSLP LDSFYSSFPA LSSPNMSSNG ASLKSKEQIQ HLAEDKQPAP RSPSSSCSGS 720 STNTANTLQV AEEADAVLKK AHSEAELHKT FKEPPLLENL AGSSSNKSLR AGGGIKVKAT 780 FGEAIIRFTL PPSWGYRELE QEIARRFSID DVSWFDLKYL DDDKEWVLLK CEGDLEECID 840 IHRSSQSQTI KISLHDAFQV KLGGSFGSTG AS*

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MEDDGGSDGG EGNGGFSPNS SFGAFPEMPM DLDLDELFFD GCWLETTDLK QSEETASASN  60
AMNDNTPFLY FAENPFQENV SNEETERRAN QEPLNQVATS SEQAEKFLLE EAEVARRWWI  120
APRGSEGPSS SVKERLLRAI SGLDEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK  180
YSSLAKYRHV SETYNFPADE GSKDVGLPGR VFLQKLPEWT PDVRFFRSEE YPRIKEAQKC  240
DVRGSLAVPV FERGSGTCLG VVEIITTTQK MNYRPELENI CKALEAVDLR SSSNLKTPST  300
EFLQVYNDFY YAALPEISDF LASVCRSYDL PLALSWAPCD RQGKGGSRHS DENFSQCVST  360
IDSACFVLDE QSKCFLEACS EYHLLQGEGM VGKAFKETKL FFVPEVTIFS KTNYALSHHA  420
KVSGLHAALA VPLKGKSNGL VEFVLEFFFP KSCIDTEAKE KMLKSLSVTL QQDFRSSNLV  480
IDKDLELEVV LPDGEDMVLS ESPVNGAETE GSLREVHMQD SSQMIKANEK GKDKKDESKL  540
SSGMDNSQLD SVPNNVPSGA EPGGLRVDAG PSTEPASTGG GSMLGSRRPG DKRRSKNEKI  600
IGLEVLQQYF AGSLKDAAKS IGVCPTTLKR ICRHHGITRW PSRKIKKVGH SLKKLQVVMD  660
SVQGAQGSLP LDSFYSSFPA LSSPNMSSNG ASLKSKEQIQ HLAEDKQPAP RSPSSSCSGS  720
STNTANTLQV AEEADAVLKK AHSEAELHKT FKEPPLLENL AGSSSNKSLR AGGGIKVKAT  780
FGEAIIRFTL PPSWGYRELE QEIARRFSID DVSWFDLKYL DDDKEWVLLK CEGDLEECID  840
IHRSSQSQTI KISLHDAFQV KLGGSFGSTG AS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28277	0.0	leaf\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00147403001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022572686.1	0.0	protein NLP1-like
Refseq	XP_022572687.1	0.0	protein NLP1-like
Refseq	XP_022572688.1	0.0	protein NLP1-like
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	A0A3P5Z6J6	0.0	A0A3P5Z6J6_BRACM; Uncharacterized protein
STRING	Bra009659.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]