PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146920001
Common NameGSBRNA2T00146920001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 701aa    MW: 79063.9 Da    PI: 6.3853
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146920001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221593.1e-49712061134
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                          gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ + +    +++++ ++s+
  GSBRNA2T00146920001  71 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQSN----HVVQFPTRSI 156
                          6899******************************************************************999888....999******* PP

               DUF822  91 esslq.sslkssalas.pvesysaspksssfpspssldsislasa....a 134
                          es+l+ s+lk++a+a+  ++++++s++ ++ +sp+slds+ +a++    +
  GSBRNA2T00146920001 157 ESPLSsSTLKNCAKAAlECQQQHPSLRIDENLSPVSLDSVVIAESdhpgN 206
                          ***9989999999876268999*******************998755550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.6E-4772219IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514459.2E-161242676IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.807.7E-171242674IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.6E-83249646IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-55279293IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-55300318IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-55322343IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-55415437IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-55488507IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-55522538IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-55539550IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-55557580IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-55595617IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MHTINTTTGS QDPIDPNRNL DPDQYPHRNP SHTQSRRPRG FAATAAAASM GQADSDVNNG  60
NITGETSSGG GGKGKREREK EKERTKLRER HRRAITSRML AGLRQYGNFP LPARADMNDV  120
IAALAREAGW SVDADGTTYR QSHQSNHVVQ FPTRSIESPL SSSTLKNCAK AALECQQQHP  180
SLRIDENLSP VSLDSVVIAE SDHPGNGRYT GASPIPSVGC VDANQLIQDV HSTERRNDYT  240
ENFYVPVYAM LPVGVIDNFG QLVDPQGVRQ ELSYMKSLNV DGVVIDCWWG IVEGWNPQKY  300
VWSGYRELFN LIRDFKLKLQ VVMAFHEYGG NASGNVMISL PQWVLEIGKD NPDIFFTDRE  360
GRRSFECMNW SIDKERVLHG RTGIEVYFDF MRSFRSDFDD LFVEGMIAAI EIGLGASGEL  420
KYPSFPERMG WIYPGIGEFQ CYDKYSQTSL LKEAKARGFA FWGKGPENAG QYNSQPHETG  480
FFQERGEYDS YYGRFFLNWY SQLLIGHAEN VLSLANLAFE ETKIIVKIPA IYWSYKTASH  540
AAELTAGYYN PSNRDGYSPV FETLKKYSVT VKFVCPGPQM SSNEHEEALA DPEGLSWQVV  600
NAAWDKGLLI GGENAITCFD REGCMRLIEM AKPRNHPDSY HFSFFTYRQP SPLVQGSTCF  660
ADLDYFIKRM HGEVYMQLQS IAHVYIGKLL FLRFIVCFCR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11924467311444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146920001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613838.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0D3AUA10.0A0A0D3AUA1_BRAOL; Beta-amylase
STRINGBo2g127050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]