PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00146615001

Common Name

GSBRNA2T00146615001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 803aa MW: 89636.5 Da PI: 6.275

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00146615001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.8	1.3e-29	540	591	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ GSBRNA2T00146615001 540 AEKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 591 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	528	611	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	543	591	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.83E-23	694	790	No hit	No description
SMART	SM00666	1.8E-24	704	787	IPR000270	PB1 domain
PROSITE profile	PS51745	29.203	704	787	IPR000270	PB1 domain
Pfam	PF00564	1.6E-17	705	785	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-19	705	784	No hit	No description
CDD	cd06407	1.83E-36	705	781	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence Send to blast
MNNNYHLPMD PAMDSSFMDG LLLDGCWLET TTTDASEFPN FSPSTSLAPF DPSSFMWSPQ 60 QDNTAAISSS TLSHMYGQGF AERSSLEDLS TLNRRFWIGP SGGGHGSSVM ERLVQAVKHI 120 KDFTSERGDS LIQLWVPVDR GGKRVLTTKE QPFSHDPMSQ RLAHYREISE NYQFSAEQED 180 SSSKDLVGLP GRVFLGQVPE WTPDVRFFKN EEYPRVQHAQ DCDVRGTLAI PVFEQGSKTC 240 LGVIEVVMTT QMVKLSPELD SICRALQAVD LRSTEVPVSP SLKGPDFSYQ AALPEIRNLL 300 RCACETHKLP LAQTWMSCLK QSKTGCRHND HNYIHCVSTI DDACYVGDPT VREFHEACSE 360 HHLLKGQGVV GEAFLTNGPC FSSDVSSYKK SEYPLSHHAT MFGLHGTVAI RLRCIHTGSA 420 DFVLEFFLPK DCRDIEEQRR MLNALSTIMA HVPRSLRTVT EKELEEEGDQ MVSEVETLPK 480 IEETCEVHES NSNPQHVGLS VDGEIGFDYG KGVSVVNENS TFSSAGGGSS RVTEKKKTKA 540 EKNITLDVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI QRWPSRKIKK VGHSLQKIQR 600 VIDSVQGVSG HHLPIGSFYA NFPNLASSQE QQSKQTTFLP SSSHSQPAKS SSPGSSCSHT 660 SSCSSETQAN KEDPVNKARE DTRAIKQTQT TQLSPSTSSQ EDDFLRVKVS YEEEKIRFRM 720 RNSRRLKDLL WEIAKRFSIE DVSRYDLKYL DEDNEWVLLR CDDDVEECVD VCRSFPGETI 780 KLLLQLSSQH LQERSSVSGS LS*

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence Send to blast

MNNNYHLPMD PAMDSSFMDG LLLDGCWLET TTTDASEFPN FSPSTSLAPF DPSSFMWSPQ  60
QDNTAAISSS TLSHMYGQGF AERSSLEDLS TLNRRFWIGP SGGGHGSSVM ERLVQAVKHI  120
KDFTSERGDS LIQLWVPVDR GGKRVLTTKE QPFSHDPMSQ RLAHYREISE NYQFSAEQED  180
SSSKDLVGLP GRVFLGQVPE WTPDVRFFKN EEYPRVQHAQ DCDVRGTLAI PVFEQGSKTC  240
LGVIEVVMTT QMVKLSPELD SICRALQAVD LRSTEVPVSP SLKGPDFSYQ AALPEIRNLL  300
RCACETHKLP LAQTWMSCLK QSKTGCRHND HNYIHCVSTI DDACYVGDPT VREFHEACSE  360
HHLLKGQGVV GEAFLTNGPC FSSDVSSYKK SEYPLSHHAT MFGLHGTVAI RLRCIHTGSA  420
DFVLEFFLPK DCRDIEEQRR MLNALSTIMA HVPRSLRTVT EKELEEEGDQ MVSEVETLPK  480
IEETCEVHES NSNPQHVGLS VDGEIGFDYG KGVSVVNENS TFSSAGGGSS RVTEKKKTKA  540
EKNITLDVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI QRWPSRKIKK VGHSLQKIQR  600
VIDSVQGVSG HHLPIGSFYA NFPNLASSQE QQSKQTTFLP SSSHSQPAKS SSPGSSCSHT  660
SSCSSETQAN KEDPVNKARE DTRAIKQTQT TQLSPSTSSQ EDDFLRVKVS YEEEKIRFRM  720
RNSRRLKDLL WEIAKRFSIE DVSRYDLKYL DEDNEWVLLR CDDDVEECVD VCRSFPGETI  780
KLLLQLSSQH LQERSSVSGS LS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.26549	3e-49	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00146615001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106294.1	0.0	PREDICTED: protein NLP5 isoform X1
Refseq	XP_013717982.1	0.0	protein NLP5-like
Refseq	XP_022544963.1	0.0	protein NLP5-like
Refseq	XP_022544964.1	0.0	protein NLP5-like
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	A0A397YS57	0.0	A0A397YS57_BRACM; Uncharacterized protein
STRING	Bo6g120380.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]