PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146480001
Common NameGSBRNA2T00146480001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26823.7 Da    PI: 6.5237
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146480001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.91.3e-23959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+i+ ++nrq+t+skR++g++KKA+ELS+LCd++ a+++fs++++l  +ss
  GSBRNA2T00146480001  9 KPIQKSTNRQITYSKRKKGLMKKAYELSTLCDIDLALLMFSPSDRLCLFSS 59
                         6899*****************************************988875 PP
2K-box165.1e-071251931179
                K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                          +++ e+l++el +L+++++  ++e+R++  + +   s++e++  e++L + l+++ +++++ll ++ e 
  GSBRNA2T00146480001 125 HSDVEELEKELCRLQQQLQISEEELRKFEPDPVRFTSMEEMEACENHLLSTLTRVVQRREHLLSRSCEA 193
                          5678999********************************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.469161IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-27281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-211155IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRAKLEIKP IQKSTNRQIT YSKRKKGLMK KAYELSTLCD IDLALLMFSP SDRLCLFSSQ  60
TRIEDVLAKY INLPDQEREN AIVFPDRSKR QGIQNKGYLL RTLEQLKTEN DMAFQINEPR  120
HEAIHSDVEE LEKELCRLQQ QLQISEEELR KFEPDPVRFT SMEEMEACEN HLLSTLTRVV  180
QRREHLLSRS CEAPSTQQSM ENIEGWEPEA EFKQARIYNS KLSQCIKSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A6e-19191192MEF2 CHIMERA
6bz1_B6e-19191192MEF2 CHIMERA
6bz1_C6e-19191192MEF2 CHIMERA
6bz1_D6e-19191192MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146480001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022544989.11e-169agamous-like MADS-box protein AGL104 isoform X2
SwissprotQ9LM462e-93AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A397YUL31e-162A0A397YUL3_BRACM; Uncharacterized protein
STRINGBo6g121610.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.21e-117AGAMOUS-like 67
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]