PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00146419001

Common Name

GSBRNA2T00146419001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BES1

Protein Properties

Length: 308aa MW: 33015.7 Da PI: 7.8627

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00146419001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	189.3	1.5e-58	2	136	1	133
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasas 89 ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkgs+++ e++e++ sa++s GSBRNA2T00146419001 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEQDGTTYRKGSSRPvERMEMGIGSATTS 91 5899*******************************************************************9999********* PP DUF822 90 pesslqsslkssalaspvesy.saspksssfpspssldsislasa 133 p++s + s++ss++ sp + + +s +p ++l+++s++sa GSBRNA2T00146419001 92 PCASFNPSPVSSSFMSPSYANlTTGDGQSLIPWLKHLSTTSSSSA 136 ****999999999986554033444555666666666555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.9E-54	3	129	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVEQDGTTY RKGSSRPVER MEMGIGSATT SPCASFNPSP VSSSFMSPSY ANLTTGDGQS 120 LIPWLKHLST TSSSSASSSS RLPSFMYLPG GSISAPVTPP LSSPTARGMN QINNSFFVSS 180 TPPSPTRQQT VPDSEWFAGI QLAQSVPASP TFSLVSRNPF GFREDQLASA GGGDGSRMWT 240 PGQSGTCSPA IPQTGDVPMS EAVAPPEFAF GSNANGLVKA WEGERIHEES GSDDLELTLG 300 NSSTRCN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-22	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-22	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-22	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-22	6	73	372	439	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00146419001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013650133.1	0.0	BES1/BZR1 homolog protein 4-like
Swissprot	Q9ZV88	1e-160	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A397YSP9	0.0	A0A397YSP9_BRACM; Uncharacterized protein
STRING	Bra035060.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-143	BES1/BZR1 homolog 4

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]