PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00146165001 | ||||||||
Common Name | GSBRNA2T00146165001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 829aa MW: 92424.4 Da PI: 6.7557 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.6 | 1e-22 | 136 | 237 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F GSBRNA2T00146165001 136 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL- 223 99*****************************7333.34459************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+v+v+r+ GSBRNA2T00146165001 224 -RGENGELRVGVRRA 237 .449999*****996 PP | |||||||
2 | Auxin_resp | 120.5 | 1.3e-39 | 262 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rW +SkWrsLk GSBRNA2T00146165001 262 AWHAISTGTMFSVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPTRWAKSKWRSLK 344 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 132 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-39 | 133 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-20 | 134 | 236 | No hit | No description |
Pfam | PF02362 | 1.4E-20 | 136 | 237 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-22 | 136 | 238 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.42 | 136 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-36 | 262 | 344 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.5E-11 | 691 | 787 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.83E-12 | 700 | 781 | No hit | No description |
PROSITE profile | PS51745 | 24.464 | 702 | 784 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 829 aa Download sequence Send to blast |
MTSSEAINVA VSGEGQKGHS NRVVDAEAAL YRELWHACAG PLVTVPRQDD RVFYFPQGHI 60 EQVEASTNQA AEQQMPLYDL PSKILCRVIN VDLKAEVDTD EVYAQITLLP EAIQDENAIE 120 KEAPPPPPPR FQVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSRQ PPTQELVAKD 180 LHANEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ 240 QGNVSSSVIS SHSMHLGVLA TAWHAISTGT MFSVYYKPRT SPSEFIVPFD QYMESVKNNY 300 SIGMRFKMRF EGEEAPEQRF TGTIVGIEDS DPTRWAKSKW RSLKVRWDET SSIPRPDRVS 360 PWKLEPALAP PALSPVTMPR PKRPRSNIAP SSHDSSMLIR EGSAMGNKDP LPASGFSRVL 420 QGQEHPTLRT KHTETVECDA PESSVVWQSS ADDDKVDVVS ASRRYENWMS SGRHESAYTD 480 LLSGFGANVD PSPGHQIPFY DHSSLPSVAA NKFIGDRDGK FDYFANQWQM MHSGLSLTLH 540 EFPKIPAASD TSFQGRGNAK YGEYPVLHSL TTENAGGNWP IRPRAVNYFE EAVQAHAQAQ 600 AREHVTKRPE MVEETAKSRD GNCRLFGIPL VNNVNGTDST MSPRNNFNDT AGLTQMTSPK 660 VQDLSDQSKG SKSTNDQREQ GRPFQANHPH PKDVHTKTHS SRSCTKVQKQ GIALGRSVDL 720 SKFQNYKELI AELDRMFEFN GELMAPKKDW LIVYTDDEND MMLVGDDPWQ EFCGMVRKIS 780 IYTKEEVRKM NPGTLGCRSE EEAVVGEGSD PKDAKSASNP SLSSAGHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-180 | 29 | 366 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-180 | 29 | 366 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-180 | 29 | 366 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00146165001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979461 | 0.0 | JN979461.1 Brassica rapa subsp. pekinensis auxin response factor 2-3 (ARF2-3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022564901.1 | 0.0 | auxin response factor 2-like | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A3P6DB62 | 0.0 | A0A3P6DB62_BRAOL; Auxin response factor | ||||
STRING | Bo9g014770.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |