PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00145796001
Common NameGSBRNA2T00145796001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 317aa    MW: 35572.5 Da    PI: 5.4589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00145796001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.8e-51131411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp+G+rF+Ptdeelv +yL++k++g++ ++ ++i+e+di+k+ePwdLp  +++k++++ew fF++ d+ky++g+r+nr+t +g Wkatgk
  GSBRNA2T00145796001  13 LPVGLRFRPTDEELVRYYLRRKINGHDDDV-KAIREIDICKCEPWDLPdfSAIKTKDSEWLFFCPLDRKYPNGSRQNRSTIAGHWKATGK 101
                          799************************999.89**************96448899999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++s k++++glk+tLvf++grapkg++t+Wvmheyr+
  GSBRNA2T00145796001 102 DRKIKSGKNNVIGLKRTLVFHSGRAPKGTRTNWVMHEYRA 141
                          ******99******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-5711164IPR003441NAC domain
PROSITE profilePS5100554.99313164IPR003441NAC domain
PfamPF023656.4E-2514140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNQNIKELSL DSLPVGLRFR PTDEELVRYY LRRKINGHDD DVKAIREIDI CKCEPWDLPD  60
FSAIKTKDSE WLFFCPLDRK YPNGSRQNRS TIAGHWKATG KDRKIKSGKN NVIGLKRTLV  120
FHSGRAPKGT RTNWVMHEYR ATEQDLSGTS PGQNPFVICK LFKKQDPSLV DEAASSPTSS  180
PDETKAVAKA QGVKPESSLV ISGDSHNGAC REATTSKLGD LDWLSFPELE SLTVFSPLHE  240
LGSSSFNAFL QPSSSDFSGN HDNTFRIQTQ YRTNEEDTDV SRFLNSVLDF QDDLEDQDFV  300
FPSEFDGAVP DQVRNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-4831657166NO APICAL MERISTEM PROTEIN
1ut4_B4e-4831657166NO APICAL MERISTEM PROTEIN
1ut7_A4e-4831657166NO APICAL MERISTEM PROTEIN
1ut7_B4e-4831657166NO APICAL MERISTEM PROTEIN
4dul_A4e-4831657166NAC domain-containing protein 19
4dul_B4e-4831657166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.130860.0leaf| microspore
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00145796001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413550.0KP641355.1 Brassica napus NAC transcription factor 62-3.1 (NAC62-3.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622434.10.0PREDICTED: NAC domain-containing protein 62-like
RefseqXP_013622435.10.0PREDICTED: NAC domain-containing protein 62-like
SwissprotQ9SCK61e-145NAC62_ARATH; NAC domain-containing protein 62
TrEMBLA0A0X9HTQ60.0A0A0X9HTQ6_BRANA; NAC transcription factor 62-3.1
STRINGBo3g109540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-142NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]