PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00145752001 | ||||||||
Common Name | GSBRNA2T00145752001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 851aa MW: 94678.2 Da PI: 6.8767 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.6 | 2.1e-22 | 159 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++ +W++++i+r++++r++l++GW+ Fv++++L +gD ++F GSBRNA2T00145752001 159 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHASEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL- 246 99*****************************7333.34459************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+v+v+r+ GSBRNA2T00145752001 247 -RGENGELRVGVRRA 260 .449999*****996 PP | |||||||
2 | Auxin_resp | 120.3 | 1.5e-39 | 285 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++ +++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rW +SkWrsLk GSBRNA2T00145752001 285 AWHAISTGTMFTVYYKPRTSPSEFIVPFDQYTESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPTRWAKSKWRSLK 367 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-40 | 155 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-40 | 156 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.71E-20 | 157 | 259 | No hit | No description |
SMART | SM01019 | 1.3E-21 | 159 | 261 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.35 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-20 | 159 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.3E-37 | 285 | 367 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.4E-5 | 714 | 760 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.219 | 724 | 808 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.85E-11 | 726 | 801 | No hit | No description |
Pfam | PF02309 | 7.2E-6 | 770 | 809 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence Send to blast |
MASSEVSMKG NRGRGENFSS AGYSDPTVAG EAQKTQSNRS VAAERVVDPE AALYRELWHA 60 CAGPLVTVPR QDDRVFYFPQ GHIEQVEAST NQAAEQQMPL YDLPSKILCR VINVDLKAEA 120 DTDEVYAQIT LLPEPVQDEN SIEKEAPPPP PPRFQVHSFC KTLTASDTST HGGFSVLRRH 180 ADECLPPLDM SRQPPTQELV AKDLHASEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG 240 DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK 300 PRTSPSEFIV PFDQYTESVK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDSDPTRWAK 360 SKWRSLKACV RWDETTSIPR PDRVSPWKIE PALSPPALSP VPMPRPKRPR SNLASSTPDS 420 SMRIREGSSK ANMDPLPASG LSRVLQGQEY PTLRTKHVES VECDAPENSV VWQSSTDDDK 480 VDVISASRRY ENWISSGRHG PTCTDLLSGF GTNIEPPHGH QIPFYDRLSS PPSVAARKIL 540 SDQDGKFEYL ANQWMMHSGL SLKLHESPKV PAASDASFQG IGNPNYGEYA LPRAVTTENA 600 AGNWPIRPRA LNYFEEAVHA QAREHVTKRP AVVQEEAAKP RDGNCRLFGI PLVNNVNGTD 660 TTLSQRNNLN DPAGPTQMAS PKVQDLSDQS KGSKSTNDHR EQGRPFPVSK PHPKDVQTKT 720 NSCRSCTKVQ KQGIALGRSV DLSKFQNYEE LVTELDRLFE FNGELMAPKK DWLIVYTDDE 780 NDMMLVGDDP WQEFCCMVRK IFIYTKEEVR KMNPGTLCCR NEEEPVVGEG SDAKDAKSAS 840 NPSLSSAGNS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 52 | 391 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-178 | 52 | 391 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-178 | 52 | 391 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.2313 | 0.0 | root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00145752001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ716227 | 0.0 | AJ716227.1 Brassica napus mRNA for putative auxin response factor (ARF2 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013718200.1 | 0.0 | auxin response factor 2-like isoform X1 | ||||
Refseq | XP_022553069.1 | 0.0 | auxin response factor 2-like isoform X2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A3P6AXS6 | 0.0 | A0A3P6AXS6_BRAOL; Auxin response factor | ||||
STRING | Bo3g108130.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |