PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00145066001
Common NameGSBRNA2T00145066001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 711aa    MW: 79772.5 Da    PI: 5.5008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00145066001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.18.9e-1153357051373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+
  GSBRNA2T00145066001 335 LRTLLILCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYISVCPF 421
                          5789**************************************************************9999...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k + + aN+ I++ +++++++Hi+Df+is+G+QWpaL++ L+ Rp+gpp+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+
  GSBRNA2T00145066001 422 KKAAIIFANHSIMRLTANADTIHIVDFGISYGFQWPALIHRLSFRPGGPPKLRITGIELPQRGfrPAEGVHETGHRLARYCQRYKVPFEY 511
                          *************************************************************99*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ +a+++e++++e+L++++gE ++Vn+ ++ ++llde+v ++s+rd+vLkl+++ +P v++ +    ++n++ F++rf eal +ysalf
  GSBRNA2T00145066001 512 NA-IAQKWETIRVEDLKIEQGEFVVVNSLFRFKNLLDETVVVNSPRDAVLKLIRKANPSVFIQAVLSGSYNAPFFVTRFREALFHYSALF 600
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+ ++kl+re+e r + E+e+ grei+nvvaceg+er+er et+++W++r+ +aGFk++pl+++ +++ kl +++ +++ + ++++ ++l
  GSBRNA2T00145066001 601 DMCDSKLAREDEMRLMFEKEFYGREIMNVVACEGTERVERPETYKQWQARVIRAGFKQLPLEKELMQNLKLKIENGYDKNFDIDQDGNWL 690
                          *****************************************************************************999********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          ++gWk+r +++ S+W
  GSBRNA2T00145066001 691 LQGWKGRIVYASSVW 705
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.659309686IPR005202Transcription factor GRAS
PfamPF035143.1E-112335705IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MGSYSGGSLD GFDFTSEFDN LPASNQTVDL SDGFYLDDPL LNFVSFDHSS APPPEPYPQK  60
ENSNNNNAAA ETASGDRLSS PSDDSEFSDS VLKYISQVLM EEDMEEKPCM FHDALALQAA  120
EKSLYEALGE QYPSSMDHGA SYPEKPSWLQ TPFPSNFVFQ STSRSTSGGN SASFGSSMFK  180
DSELAMQFKR GVDEASKFLP KSSQLFIDVE SYVPKNSGFD ENTSEVFVKT EKKDEAEHPP  240
PPPSNSRLTG KKKSHWRDED EDLAEERSNK QSAVYVEETE LSEMFDKILL CGGTGQPVCI  300
TDQKFPTEAK ARGKKSTATT TNSNSKGSKK ETADLRTLLI LCAQAVSVDD RRTANEMLRQ  360
IREHSSPLGN GSERLAHYFA NSLEARLAGT GTQIYTALSS KKTSAADMLK AYQTYISVCP  420
FKKAAIIFAN HSIMRLTANA DTIHIVDFGI SYGFQWPALI HRLSFRPGGP PKLRITGIEL  480
PQRGFRPAEG VHETGHRLAR YCQRYKVPFE YNAIAQKWET IRVEDLKIEQ GEFVVVNSLF  540
RFKNLLDETV VVNSPRDAVL KLIRKANPSV FIQAVLSGSY NAPFFVTRFR EALFHYSALF  600
DMCDSKLARE DEMRLMFEKE FYGREIMNVV ACEGTERVER PETYKQWQAR VIRAGFKQLP  660
LEKELMQNLK LKIENGYDKN FDIDQDGNWL LQGWKGRIVY ASSVWVPSSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-5334270926382Protein SCARECROW
5b3h_A7e-5334270925381Protein SCARECROW
5b3h_D7e-5334270925381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250254KKKSH
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00145066001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614698.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A3N6RAA30.0A0A3N6RAA3_BRACR; Uncharacterized protein
STRINGBo01118s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]