PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00145022001
Common NameGSBRNA2T00145022001, LOC106368871
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 897aa    MW: 99327.1 Da    PI: 4.7178
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00145022001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK887.9e-28610660252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          ek+i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++
  GSBRNA2T00145022001 610 EKTIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 660
                          799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.836599680IPR003035RWP-RK domain
PfamPF020426.7E-24613660IPR003035RWP-RK domain
SuperFamilySSF542777.85E-24788883No hitNo description
Gene3DG3DSA:3.10.20.2401.3E-23796879No hitNo description
SMARTSM006661.8E-26798881IPR000270PB1 domain
PROSITE profilePS5174526.329798881IPR000270PB1 domain
CDDcd064071.27E-43799880No hitNo description
PfamPF005645.8E-16799880IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDSKSLKET  60
EEGASDSTAM NANSPFLCFG ENPSQDNFSN EETERMNQEG LDQAEKFLLD EAEVGRSWWI  120
APRTREDPSS SVKERLLRAI SGLEEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK  180
YTSLAKYRHV SENYNFPADE GSTEGGLPGR VFLQKFPEWT PDVRFFRSDE YPRIKEAQKC  240
DVRGSLALPV FERCSGTCLG VVEVVTTTQK MNYRPELENI CKALEAVDLR SSSNLKPPSN  300
EVYNDFYYAA LPEISDFLAS VCRRYDLPLA LSWAPCAQQG KGGSRHSDEN FSQCVSTIDS  360
ACFVLDEESK YFLEACSEHH LLQGEGIVGK AFKATKLCFV PEVITFSKTN YPLAHHAKIS  420
GLHAALAVPL KSKSNGLVDF VLEFFFPKGC LDTEAKQEML KSLSVTLQQD FRSSNLVIDK  480
DLELEVVLPV REDMVLLENP LTGAETAEAL REIHLLQESS WISHMIKANE KGKDVSLSWE  540
YQNEDPKDEF KLSPGWNNSQ LDPAPNNIPS EAEQFQQGST SGLRVDAGPS TESASTGGRR  600
PGEKRRTKTE KTIGLDVLRQ YFAGSLKDAA KSIGVCPTTL KRICRHHGIT RWPSRKIKKV  660
GHSLKKLQLV MDSVQGAQGS IPLDSFYTSF PELSSPNISS NGSSLKNNEQ LHHLSVPIEN  720
GGVAEDKPAQ MSPSSSGSGS NTNTPNANGV LKEAQNEVEL QNGNQEETKC LARTQSHNIF  780
KEPPLPGSSK MSLRDGGGIK VKATFGEAII RFTLLPSWGY RELQQEIARR FNIVDVSWFD  840
LKYLDDDEEW VLLTCEADLE ECIDIYRSSQ SQTIKISLHD PFQVKLGGSF GSSGPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.212380.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00145022001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022561735.10.0protein NLP1 isoform X2
SwissprotQ8H1110.0NLP1_ARATH; Protein NLP1
TrEMBLA0A3N6PMV60.0A0A3N6PMV6_BRACR; Uncharacterized protein
STRINGBo7g014920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.10.0Nin-like family protein
Publications ? help Back to Top
  1. Suzuki W,Konishi M,Yanagisawa S
    The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor.
    Plant Signal Behav, 2014.
    [PMID:24270631]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]