PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144904001
Common NameGSBRNA2T00144904001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 389aa    MW: 43747.9 Da    PI: 6.9124
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144904001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.4e-082192512254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp+ +++  LA+++gL+  qV++WF N R +
  GSBRNA2T00144904001 219 LSYPKDSDKIMLARQTGLSRGQVSNWFINARVR 251
                          78*****************************88 PP
2BELL127.45.2e-41117188172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqelq+k +kLls+l+eVdkrYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrc++dai+ qi
  GSBRNA2T00144904001 117 ERQELQRKLTKLLSILDEVDKRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCVRDAISVQI 188
                          79*******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-6457186IPR006563POX domain
PfamPF075261.1E-4463185IPR006563POX domain
SMARTSM003893.7E-4174259IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-18208265IPR009057Homeodomain-like
SuperFamilySSF466891.54E-11211261IPR009057Homeodomain-like
PROSITE profilePS5007110.544214255IPR001356Homeobox domain
PfamPF059201.0E-12215251IPR008422Homeobox KN domain
CDDcd000868.69E-8221256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MFEIQDSGSW RDQKDNDRNC FSVMMRPTTE QGLSLGLSSQ TETMRGNNNE YATQVVSGFT  60
RTIHNSKYLN AAQELLDEAI NGKKALKQFQ PEGETINEEK EYKLEESNRN PDIPQGERQE  120
LQRKLTKLLS ILDEVDKRYK QYYHQMQIVV SSFDVIAGCG AAKPYTALAL QTISRHFRCV  180
RDAISVQILV IRKSLGGEHD GLDRKSLCLN SYVFENSELS YPKDSDKIML ARQTGLSRGQ  240
VSNWFINARV RLWKPMVEEI YKEEFTDALK ESGPNLSSRN TPATTEIQEQ HQMESSSNNV  300
VASSSMGQNS VAHAGDRFMM VTEMTRHGSG GMSLTLGIKN SDAHSDVSMS GVINNKKNTI  360
PANDFQYLSS GNHQHRRGPS QLFHDFVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144904001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0567961e-148AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBankBT0006091e-148BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121216.10.0PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A0D3D3R80.0A0A0D3D3R8_BRAOL; Uncharacterized protein
STRINGBo7g018650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]