PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144573001
Common NameGSBRNA2T00144573001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 324aa    MW: 35921.1 Da    PI: 8.1719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144573001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd +++ +v+ +G g+W++I+++ g++R++k+c++rw +yl
  GSBRNA2T00144573001 14 KGLWTAEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNYL 61
                         678*******************************************97 PP

2Myb_DNA-binding52.11.5e-1669110346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++++E+el++++++  G++ W++Iar+++ gRt++++k++w++
  GSBRNA2T00144573001  69 SFSPQEEELIIQCHRIIGSR-WSSIARKLP-GRTDNDVKNHWNT 110
                          79******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-25564IPR009057Homeodomain-like
PROSITE profilePS5129427.406965IPR017930Myb domain
SuperFamilySSF466891.33E-3011108IPR009057Homeodomain-like
SMARTSM007174.9E-161363IPR001005SANT/Myb domain
PfamPF002493.1E-161461IPR001005SANT/Myb domain
CDDcd001673.37E-131761No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2365117IPR009057Homeodomain-like
PROSITE profilePS5129419.29266116IPR017930Myb domain
SMARTSM007175.9E-1566114IPR001005SANT/Myb domain
PfamPF002491.7E-1469110IPR001005SANT/Myb domain
CDDcd001671.19E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRPPCCDKS NVKKGLWTAE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHDSF SPQEEELIIQ CHRIIGSRWS SIARKLPGRT DNDVKNHWNT KLKKRLVKMG  120
IDPVTHKPVS QVLTEFRNIS GHGNSSEPFV RNFKTEPSNN SILTQSNSAW EMMRNTTSHE  180
SYHNSPMIFT HPTSSEFHFS NHSNFPLNGA TSSCSSSSSS ASITQPNQGA QAPVTTFCWS  240
DYLLSDPVLP LSSQTQVVGS SATSNLTFAQ NENFNSQGEC SSQKIASKAS GTCHSASSFV  300
DEILDKDQEM LSQFPQLLND FDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
UniprotTISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269|PubMed:17666023, ECO:0000269|PubMed:18397379}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144573001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728710.0AC172871.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006L19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151869.10.0PREDICTED: transcription factor MYB35
SwissprotQ9LSI71e-175MYB35_ARATH; Transcription factor MYB35
TrEMBLM4E9810.0M4E981_BRARP; Uncharacterized protein
STRINGBra025337.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-172MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  3. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  4. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]