PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00144536001

Common Name

GSBRNA2T00144536001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 345aa MW: 37301.1 Da PI: 8.2322

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00144536001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110.9	6.6e-35	49	106	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++ GSBRNA2T00144536001 49 TVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPDD 106 699***************************99******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-17	50	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.4E-29	50	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.3E-31	51	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.717	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.38E-17	191	264	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-28	194	265	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.4E-25	205	262	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MLEVGAMEMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHIHHHTLTV TYKECLKNHA 60 AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH RRDPDDSSLA SAVPPPSLPP 120 SSTTAAIEYQ PHHRHHPPPP APPLPRSPTS SSPPPISSSY MLLALSGNNK PGGNSLPFSD 180 LNFAANNLST HHHHHNHNHH TPGSRKRFRT KFSQTQKDKM HEFADRIGWK IQKRDEDEVR 240 DFCRDVGVDK GVLKVWMHNN KNTFNTRRDQ PFSGDTTVQK IDNGVAVSGG KNINNNNNNN 300 NNNNAVDVGV HGGNGLEHDL HGGDGGRFES DSGGAAANGS SSTS*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MLEVGAMEMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHIHHHTLTV TYKECLKNHA  60
AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH RRDPDDSSLA SAVPPPSLPP  120
SSTTAAIEYQ PHHRHHPPPP APPLPRSPTS SSPPPISSSY MLLALSGNNK PGGNSLPFSD  180
LNFAANNLST HHHHHNHNHH TPGSRKRFRT KFSQTQKDKM HEFADRIGWK IQKRDEDEVR  240
DFCRDVGVDK GVLKVWMHNN KNTFNTRRDQ PFSGDTTVQK IDNGVAVSGG KNINNNNNNN  300
NNNNAVDVGV HGGNGLEHDL HGGDGGRFES DSGGAAANGS SSTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-19	204	263	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00144536001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189594	0.0	AC189594.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013N10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151829.1	0.0	PREDICTED: zinc-finger homeodomain protein 9
Swissprot	Q9LHF0	1e-124	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A397Z3A3	0.0	A0A397Z3A3_BRACM; Uncharacterized protein
STRING	Bra025363.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	4e-91	homeobox protein 34

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]