PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144497001
Common NameGSBRNA2T00144497001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 147aa    MW: 16177.4 Da    PI: 8.4928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144497001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067729123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++Cgk F +      H+r+H
  GSBRNA2T00144497001  7 HVCKICGKWFATAKGVYGHQRVH 29
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.07E-9782No hitNo description
PROSITE profilePS5015710.762734IPR007087Zinc finger, C2H2
SMARTSM003550.023729IPR015880Zinc finger, C2H2-like
PfamPF138940.0016729No hitNo description
Gene3DG3DSA:3.30.160.601.6E-4730IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SMARTSM003550.286082IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-56078IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.4E-66086IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1756087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSQSLLHVCK ICGKWFATAK GVYGHQRVHS DSYSDVVAQE ALLIPLGSRL QEAPESNSSY  60
RCKVCGKSFG CFQSLGGHQN LHIGGKRKRS EAEKIVPQPS SFEVSQEEHS VELKEGFEKL  120
STCSDVLAQP SSCRKDYRVT PAMRML*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144497001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022543541.11e-77uncharacterized protein LOC106349118 isoform X1
TrEMBLA0A3P5YMM74e-76A0A3P5YMM7_BRACM; Uncharacterized protein
TrEMBLM4E9D74e-76M4E9D7_BRARP; Uncharacterized protein
STRINGBra025393.1-P7e-77(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.11e-28C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]