PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00144297001

Common Name

GSBRNA2T00144297001, LOC106348782

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 315aa MW: 34397.2 Da PI: 9.1961

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00144297001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.3	2.2e-15	154	205	4	55
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L eN+ L k l +++ GSBRNA2T00144297001 154 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQT 205 79****************************************9988777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.6E-17	151	215	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.841	153	216	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.5E-12	154	205	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.7E-11	154	205	No hit	No description
Pfam	PF00170	3.3E-13	154	202	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	158	173	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	6.4E-15	222	272	IPR020983	Basic leucine-zipper, C-terminal
Pfam	PF12498	3.7E-6	279	309	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MEKVFSVEVT SCNNHLWSEP AKESDGTSGM NRSDSEWAFH RFIQESSAGE DGVSVSGPSS 60 PVDSHEYREI LKSKLNLACA AVAMKRGAFI KRQDTSGRSE NGGAAYTSSA SDQGSLASST 120 KATPVMSSTI TSGSEFSGDD EEADGETNMH PTNVKRVKRM LSNRESARRS RRRKQAHLSE 180 LETQVSQLRV ENSNLMKGLT DVTQTFNDAS VENRVLKANL ETLRAKVKMA EETVKRITGF 240 NPMFHTMPQV SSVSNPSETS NSLDTSSQVT TPEISSSSNK SKALMGCKMN RTESMRRVAS 300 LEHLQKRIRS VGDK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	174	RRSRRRKQ
2	169	174	SRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.21781	0.0	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Present in silique valves, vasculature and funiculi. {ECO:0000269\|PubMed:18841482}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, young leaves, pollen, and flowers. {ECO:0000269\|PubMed:12657652, ECO:0000269\|PubMed:18841482}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269\|PubMed:26263501, ECO:0000269\|PubMed:29348240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00144297001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353265	0.0	AK353265.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-D15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013644045.1	0.0	basic leucine zipper 63
Swissprot	B9DGI8	1e-158	BZP63_ARATH; Basic leucine zipper 63
TrEMBL	A0A3P5Z2H8	0.0	A0A3P5Z2H8_BRACM; Uncharacterized protein
TrEMBL	M4D0L2	0.0	M4D0L2_BRARP; Uncharacterized protein
STRING	Bra010010.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6846	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-139	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	106348782

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Mair A, et al. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]