PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00144207001

Common Name

GSBRNA2T00144207001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 959aa MW: 107139 Da PI: 8.1869

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00144207001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.1e-08	37	71	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 WT+ E e+++da +++G + Wk++a+ + +R++ GSBRNA2T00144207001 37 QWTKGELERFYDAYRKHGRD-WKKVAASVRSNRSAD 71 6***************77.*****99888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.8E-7	36	81	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.6E-4	37	73	IPR009057	Homeodomain-like
Pfam	PF00249	7.0E-7	37	73	IPR001005	SANT/Myb domain
CDD	cd00167	0.00296	38	73	No hit	No description
SMART	SM01135	3.4E-52	553	654	IPR033471	DIRP domain
Pfam	PF06584	9.6E-30	553	653	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MAPRSVNKRV TKEASSSPDI DKVKQRKKKL TDKLGPQWTK GELERFYDAY RKHGRDWKKV 60 AASVRSNRSA DMVEALFSMN RAYLSLPEGT ASVAGLIAMM TDHYSVIEES ESEGEGHGAS 120 GVSRKYQKRK RAKVPPSDVR EEVISPHSIA STEGCLSFLK TTQVYGRERR ATGKRTPRFL 180 VPSADQRDDT QGSTPPNKRA KKQLEADADD DDDDDDILAL ALANASTRVG GSPYRRPDTT 240 PNVKMSQAKE AQSKHQASSM SRNVVRISRD RRHIKRSPDR DGALLMDIEG VGNAEVPRKE 300 KNVRTVEAEG DTSDDSGEAC NAPRDGLEAL HALADLSALL TPGGLMESES SAELKEERVA 360 NTRETVSSSH TREKAKQAGR EDHSVLHVIS AADSRKPKSA QELVDGNAVP IGELDTSRRK 420 RKPLHNKESA EDDNLKTSIN ARRVGQGPAK QQKTAKTSEE SCSTSDKKIT RPNEAVSATQ 480 VSGSGPASLP QKPPNRRKIS LKKSLQERTK SSETTHNKSH SYEIDPEHEL LKDKVSTCLS 540 HPLVRRRCIF EWFYSAIDYP WFAKMEFVDY LNHVGLGHVP RLTRLEWSVI KSSLGRPRRF 600 SERFVHEERD KLEQYRESVR KQYAELRAGA REVLHTDLAQ PLSVGNRVIA IHPKTREIRD 660 GKILTIDHNK YNVLFDELGV DVVMDIDCMP LNPLEYTPDG LRRQMDNCLT VCGEAQVRKH 720 PSSDASVLFT PSELENVEFS MSHTKKEDDR DRRVTTDQTY NTANRKERRD EIQQDLMLER 780 TSDAQEMEPE MLGIVSGSRS IAQAMVDAAI KAASSVMDDK DAGKMVIQAL DSIGEHHQPL 840 DNSIVSRMKH QDQANGSLDH HHQNRSPSNT GEAMNEGLMG SGKNETQMDS ELISSCVATW 900 LMIQKCTEKQ YPPGDVAQVM ETAVSSLQPR CPQNMPIYRE IQTCMGWIKN QIMALVKT*

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MAPRSVNKRV TKEASSSPDI DKVKQRKKKL TDKLGPQWTK GELERFYDAY RKHGRDWKKV  60
AASVRSNRSA DMVEALFSMN RAYLSLPEGT ASVAGLIAMM TDHYSVIEES ESEGEGHGAS  120
GVSRKYQKRK RAKVPPSDVR EEVISPHSIA STEGCLSFLK TTQVYGRERR ATGKRTPRFL  180
VPSADQRDDT QGSTPPNKRA KKQLEADADD DDDDDDILAL ALANASTRVG GSPYRRPDTT  240
PNVKMSQAKE AQSKHQASSM SRNVVRISRD RRHIKRSPDR DGALLMDIEG VGNAEVPRKE  300
KNVRTVEAEG DTSDDSGEAC NAPRDGLEAL HALADLSALL TPGGLMESES SAELKEERVA  360
NTRETVSSSH TREKAKQAGR EDHSVLHVIS AADSRKPKSA QELVDGNAVP IGELDTSRRK  420
RKPLHNKESA EDDNLKTSIN ARRVGQGPAK QQKTAKTSEE SCSTSDKKIT RPNEAVSATQ  480
VSGSGPASLP QKPPNRRKIS LKKSLQERTK SSETTHNKSH SYEIDPEHEL LKDKVSTCLS  540
HPLVRRRCIF EWFYSAIDYP WFAKMEFVDY LNHVGLGHVP RLTRLEWSVI KSSLGRPRRF  600
SERFVHEERD KLEQYRESVR KQYAELRAGA REVLHTDLAQ PLSVGNRVIA IHPKTREIRD  660
GKILTIDHNK YNVLFDELGV DVVMDIDCMP LNPLEYTPDG LRRQMDNCLT VCGEAQVRKH  720
PSSDASVLFT PSELENVEFS MSHTKKEDDR DRRVTTDQTY NTANRKERRD EIQQDLMLER  780
TSDAQEMEPE MLGIVSGSRS IAQAMVDAAI KAASSVMDDK DAGKMVIQAL DSIGEHHQPL  840
DNSIVSRMKH QDQANGSLDH HHQNRSPSNT GEAMNEGLMG SGKNETQMDS ELISSCVATW  900
LMIQKCTEKQ YPPGDVAQVM ETAVSSLQPR CPQNMPIYRE IQTCMGWIKN QIMALVKT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00144207001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151195.1	0.0	PREDICTED: protein ALWAYS EARLY 1
Refseq	XP_009151196.1	0.0	PREDICTED: protein ALWAYS EARLY 1
Refseq	XP_018508069.1	0.0	PREDICTED: protein ALWAYS EARLY 1
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	M4D0F2	0.0	M4D0F2_BRARP; Uncharacterized protein
STRING	Bra009950.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	3e-73	DNA binding

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]