PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143349001
Common NameGSBRNA2T00143349001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 343aa    MW: 37393.9 Da    PI: 5.3664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143349001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-191565155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  GSBRNA2T00143349001 15 TKFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 65
                         5899******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.28E-311572No hitNo description
PROSITE profilePS5103220.7191673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-291673IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-211674IPR016177DNA-binding domain
PfamPF008476.0E-121665IPR001471AP2/ERF domain
SMARTSM003802.3E-341679IPR001471AP2/ERF domain
PRINTSPR003674.9E-81728IPR001471AP2/ERF domain
PRINTSPR003674.9E-83955IPR001471AP2/ERF domain
PfamPF143688.2E-14205299IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
SuperFamilySSF476991.98E-12225300IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
Gene3DG3DSA:1.10.110.104.6E-12226299No hitNo description
CDDcd000103.47E-16229291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNTSKSKKKQ EEAGTKFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAE EAALAYDRAA  60
RSMRGTRART NFVYSDMPPS SSVTSIISPD DPTPTPPPPP PAATPCSDDP VDYLMMFNQY  120
SSTDSPMLQP AQVESSYMFG GSPSCYSNSS SELPPLPSDL SNSCYSQQPW SVEDYSSATY  180
FEGEYVHSPM FSTMPSFFSF YAIVAALLVV ANFGIIHTSG QSVSCLNQLA PCLNYLNGTK  240
DVPEICCNPL NSVIRNNPEC LCRMISNRGS SKAEQAGINV NDAQMLPARC GEHVNPIACL  300
TRSRGSTNAD QSSSTGNSSS QSYWMTTLAF AVTLLSFILQ IN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-211472362ATERF1
3gcc_A8e-211472362ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in germinating seeds. Present in young shoots, at low levels, especially in leaf primordia and developing leaf blades. Also detected in vascular tissue, mostly in xylem, of young leaves, petioles and hypocotyls. {ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143349001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712730.11e-142ethylene-responsive transcription factor LEP-like
SwissprotQ9M6445e-86LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A3P6DF170.0A0A3P6DF17_BRAOL; Uncharacterized protein
STRINGBo2g011600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-48ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]